BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925399 Length=931 Score E Sequences producing significant alignments: (Bits) Value AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 994 0.0 AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284... 702 0.0 AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 372 4e-102 > AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775 REVERSE LENGTH=1312 Length=1312 Score = 994 bits (538), Expect = 0.0 Identities = 703/782 (90%), Gaps = 14/782 (2%) Strand=Plus/Plus Query 157 GGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACAATGGAAG-GGGCTTTGTTTCA 215 |||||||||||||| ||||||||||||| |||| |||||||||||| ||| ||||| || Sbjct 232 GGAGATTGGTTGTTCACCCAAAAGGAAACGAAGCGGACAATGGAAGTGGG-TTTGTGTCT 290 Query 216 ATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGACGTGTTTGCTTATCTCACT 275 |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 291 ATGTATGTGGAATGCCTCTCATCGACAACACCACCCATTGATGTGTTTGCCTATCTCACT 350 Query 276 TTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGAAGTAAAG 335 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 351 TTCTTTGTCTTCAGCGAGGAAGAGAAGAAGTACCTCTCTTTTCAAGATGTTGAAGTGAAG 410 Query 336 CGTTTCAATACTTCTAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGATTGAAACACTC 395 ||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||| Sbjct 411 CGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCAAAAGCTCTTCCGGTTGAAACACTC 470 Query 396 AAAGACTGTGCAAAGGGATTTATCTTGTACGGAGAACTACATGAGTTTGGTGCTCATGTG 455 |||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||||||| Sbjct 471 AAAGACCGTGCAAAGGGATTTATCTTGTACGGTGAAGAACATGAGTTCGGTGCTCATGTG 530 Query 456 AAGATTGTTTCACGACCCGTCTCTTTTGGTGAAGATCTCCCTTTCCACAAATTCTCATGG 515 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct 531 AAGATTGTTTCACGACCCGCCTCTTTTGGTGAAGATCTCCCTTTTCACAAATTCTCTTGG 590 Query 516 ACTATTCGTGATTTCTCCCTTCTCAG-ACAGAATGATTGCGTTTCGAAAACCTTTCACAT 574 ||||||||||||||| | ||||| | ||||||||||| ||| || |||||||||||||| Sbjct 591 ACTATTCGTGATTTCGCTCTTCT-GGAACAGAATGATTACGTATCCAAAACCTTTCACAT 649 Query 575 GGGAGAAAAGGATTGGACTCTAACTTTGTATCCAAAGGGGGACTCTAGAG-CAGATGGCG 633 ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| | Sbjct 650 GGGAGAAAAGGATTGGACTCTAAAGTTGTATCCAAAGGGGGACTCT-GAGGCAGATGACA 708 Query 634 AGTTA-TCCCAGCATTTGCATTTAGCCGACGGTGAAACTTTATTCAAGGGTGAGCTGATT 692 ||||| | | |||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 709 AGTTAATTC-AGCATTTGCATTTAGCTGACGGTGAAACTTTAGCCAAGGGTGAGCTGATT 767 Query 693 TTCGTTCGAGTAAACCTGCAGGTTCTAGACCCGCGTGGATCCGATCACCTAACAGGAAGC 752 ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 768 TTCGTGCGAGTAAACCTGAAGGTTCTAGACCCGCGTGGATCCAATCACCTAACAGGAAGC 827 Query 753 ATTAACGGTTGGGTCATGGCCTCGACCAAAGCGATGTG-TCTTCCTCAATTCATGCCTTT 811 ||||| ||||| ||||| ||||| ||||||| || | ||||||||||| |||| |||| Sbjct 828 CTTAACTGTTGGCTCATGAACTCGAACAAAGCG-TGGGGTCTTCCTCAATCCATGTCTTT 886 Query 812 AGCTAAAATTCAGGGGTCTTACTTGGACCGTGAAGGTACTTTGGAGGTAGAGATCGAATG 871 | ||||| | ||||| |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 887 CGATAAAAATGAGGGGGCTTACTTGGATCGTGAAGGGACTTTGGAGGTAGAGATTGAATG 946 Query 872 TGAAGTTGTTAACTCC-ATCAAAAACCATCCCTGT-TTTTAGGATATCTACCATGCCATG 929 |||| || |||||| || ||||||||||||| | |||||||||||| |||||| || | Sbjct 947 TGAAATTAAAAACTCCCAT-AAAAACCATCCCT-TCTTTTAGGATATCAACCATGTCAGG 1004 Query 930 TC 931 || Sbjct 1005 TC 1006 > AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284469-24286145 REVERSE LENGTH=1190 Length=1190 Score = 702 bits (380), Expect = 0.0 Identities = 676/814 (83%), Gaps = 39/814 (5%) Strand=Plus/Plus Query 88 TTCACATTTTTCTTCACCATAA--ACATATAAGTAAGAAATGTTGTCTTTTGGTAACCTT 145 ||||||| ||||||||| | || | |||||| |||||||||||| | ||| | || Sbjct 147 TTCACATCTTTCTTCACTACAAGCATATATAACTAAGAAATGTTG-CCTTT--T----TT 199 Query 146 ATATAAAATCAGGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACAATGGAAGGGG 205 || ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 200 GTA-AAAATCAGGAGATTGGTTGTTTACCCAAAAGGAAACGAAGAGGACAATGGAAAGGG 258 Query 206 CTTTGTTTCAATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGACGTGTTTGC 265 |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 259 CTTTGTGTCTATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGATGTGTTTGA 318 Query 266 TTATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGT 325 ||||||| ||||||||||||||| | || |||| || ||||||||||| || |||||||| Sbjct 319 TTATCTCTCTTTCTTTGTCTTTAACAAGAAAGACAACAAGTACCTCTCAATCCAAGATGT 378 Query 326 TGAAGTAAAGCGTTTCAATACTTCTAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGAT 385 |||||| |||||||||| | ||||||||||||||||||||||| |||||||| | ||| | Sbjct 379 TGAAGTTAAGCGTTTCAGTTCTTCTAAAACGGTTTGGGGATTGCCAAAAGCTATGTCGCT 438 Query 386 TGAAACACTCAAAGACTGTGCAAAGGGATTTATCTTGTACGGAGAACTACATGAGTTTGG 445 ||||||| ||| ||| |||||||||||||||| || | ||||||| | ||||||||| Sbjct 439 TGAAACATTCACTGACCCTGCAAAGGGATTTATCGTGGAAGGAGAACCATGTGAGTTTGG 498 Query 446 TGCTCATGTGAAGATTGTTTCA-CGACCCGTCTCTTTTGGTGAAGA-TCTCCCTTTCCAC 503 ||||||||||||||||| |||| | ||||||| || ||| ||| || ||||||||| ||| Sbjct 499 TGCTCATGTGAAGATTGCTTCATC-ACCCGTCCCTGTTGATGA-GAATCTCCCTTTTCAC 556 Query 504 AAATTCTCATGGA-CTATTCGTGATTTCTCCCTTCTCAGACAGAATGATTGCGTTTCGAA 562 |||||||| |||| | |||||||||||||| |||| | ||||||||||||| | || || Sbjct 557 AAATTCTCTTGGAGC-ATTCGTGATTTCTCTGTTCTGAAACAGAATGATTGCATATCTAA 615 Query 563 AACCTTT-CACATGGGAGAAAAGGATTGGACTCTAACTTTGTATCCAAAGGGGGACTCTA 621 ||||||| || ||||||| |||| |||||||||||||| ||||||||||||| |||||| Sbjct 616 AACCTTTGCA-ATGGGAGGAAAGAATTGGACTCTAACTGTGTATCCAAAGGGAGACTCT- 673 Query 622 GAG-CAGATGGCGAGTTATCCCAGCATTTGCATTTAGCCGACGGTGAAA-CTTTATT-CA 678 ||| ||||| |||||| | | || | ||||||||||| ||||||||| ||| || | Sbjct 674 GAGGCAGATAACGAGTTCTGCAAGTACTTGCATTTAGCTGACGGTGAAGTCTT-ATCGCC 732 Query 679 AGGGTGAGCTGATTTTCGTTCGAGTA-AACCTGCAGG--TTCTAGACCCGCGTGGATCCG 735 || |||| |||||| ||| |||| | ||| | ||| || ||||||||||||||||| Sbjct 733 TGG-TGAGATGATTTCCGTGCGAGCACAAC-TA-AGGGCTT-TAGACCCGCGTGGATCCA 788 Query 736 ATCACCTAACAGGAAG-CATT-AACGGTTGGGTCATGGCCTCGACCAAAGCGATGTGTCT 793 | ||| ||||| | | || ||| | || ||||||| |||||||||||| | || | Sbjct 789 AACACAAAACAGTCTGGC-TTCAACAAT-GGATCATGGCAGCGACCAAAGCGAGGGGTAT 846 Query 794 TCCTCAATTCATGCCTTTAGCTAAAATTCAGG-GGTCTTACTTGGACCGTGAAGGTACTT 852 |||||||| | || |||||||| | |||||| || |||||||||| ||||| ||||| Sbjct 847 TCCTCAATCCTTGTCTTTAGCTGATCTTCAGGAGG-CTTACTTGGA---TGAAGATACTT 902 Query 853 TGGAGGTAGAGATCGAATGTGAAGTTGTTAACTC 886 || | || |||||||||||||||||||| ||||| Sbjct 903 TGAATGTGGAGATCGAATGTGAAGTTGTGAACTC 936 > AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679 REVERSE LENGTH=687 Length=687 Score = 372 bits (201), Expect = 4e-102 Identities = 246/268 (92%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 157 GGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACAATGGAAGGGGCTTTGTTTCAA 216 ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| Sbjct 137 GGAGATTGGTTGTTTACCCGAAAGGAAACGAAGCTGACAATGGAAGGGGCTTTGTTTCAA 196 Query 217 TGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGACGTGTTTG-CTTATCTCACT 275 ||||||||||||| |||||||| ||||||||||||||||| ||||||| || |||||||| Sbjct 197 TGTATGTGGAATGCCTCTCATCGACAACACCACCCATTGATGTGTTTGTCT-ATCTCACT 255 Query 276 TTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGAAGTAAAG 335 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct 256 TTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTCTATTCAAGATGTTGAAGTTAAG 315 Query 336 CGTTTCAATACTTCTAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGATTGAAACACTC 395 | |||||| | || ||||||||||||||||||||| ||| |||| || ||||||||||| Sbjct 316 AGGTTCAATTCCTCAAAAACGGTTTGGGGATTGTCACAAGTTCTTCCGGTTGAAACACTC 375 Query 396 AAAGACTGTGCAAAGGGATTTATCTTGT 423 |||||| ||||||||||||||||||||| Sbjct 376 AAAGACCGTGCAAAGGGATTTATCTTGT 403 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45512137182 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5