BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925399
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 994 0.0
AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284... 702 0.0
AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 372 4e-102
> AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775
REVERSE LENGTH=1312
Length=1312
Score = 994 bits (538), Expect = 0.0
Identities = 703/782 (90%), Gaps = 14/782 (2%)
Strand=Plus/Plus
Query 157 GGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACAATGGAAG-GGGCTTTGTTTCA 215
|||||||||||||| ||||||||||||| |||| |||||||||||| ||| ||||| ||
Sbjct 232 GGAGATTGGTTGTTCACCCAAAAGGAAACGAAGCGGACAATGGAAGTGGG-TTTGTGTCT 290
Query 216 ATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGACGTGTTTGCTTATCTCACT 275
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 291 ATGTATGTGGAATGCCTCTCATCGACAACACCACCCATTGATGTGTTTGCCTATCTCACT 350
Query 276 TTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGAAGTAAAG 335
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 351 TTCTTTGTCTTCAGCGAGGAAGAGAAGAAGTACCTCTCTTTTCAAGATGTTGAAGTGAAG 410
Query 336 CGTTTCAATACTTCTAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGATTGAAACACTC 395
||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 411 CGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCAAAAGCTCTTCCGGTTGAAACACTC 470
Query 396 AAAGACTGTGCAAAGGGATTTATCTTGTACGGAGAACTACATGAGTTTGGTGCTCATGTG 455
|||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 471 AAAGACCGTGCAAAGGGATTTATCTTGTACGGTGAAGAACATGAGTTCGGTGCTCATGTG 530
Query 456 AAGATTGTTTCACGACCCGTCTCTTTTGGTGAAGATCTCCCTTTCCACAAATTCTCATGG 515
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 531 AAGATTGTTTCACGACCCGCCTCTTTTGGTGAAGATCTCCCTTTTCACAAATTCTCTTGG 590
Query 516 ACTATTCGTGATTTCTCCCTTCTCAG-ACAGAATGATTGCGTTTCGAAAACCTTTCACAT 574
||||||||||||||| | ||||| | ||||||||||| ||| || ||||||||||||||
Sbjct 591 ACTATTCGTGATTTCGCTCTTCT-GGAACAGAATGATTACGTATCCAAAACCTTTCACAT 649
Query 575 GGGAGAAAAGGATTGGACTCTAACTTTGTATCCAAAGGGGGACTCTAGAG-CAGATGGCG 633
||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
Sbjct 650 GGGAGAAAAGGATTGGACTCTAAAGTTGTATCCAAAGGGGGACTCT-GAGGCAGATGACA 708
Query 634 AGTTA-TCCCAGCATTTGCATTTAGCCGACGGTGAAACTTTATTCAAGGGTGAGCTGATT 692
||||| | | |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 709 AGTTAATTC-AGCATTTGCATTTAGCTGACGGTGAAACTTTAGCCAAGGGTGAGCTGATT 767
Query 693 TTCGTTCGAGTAAACCTGCAGGTTCTAGACCCGCGTGGATCCGATCACCTAACAGGAAGC 752
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 768 TTCGTGCGAGTAAACCTGAAGGTTCTAGACCCGCGTGGATCCAATCACCTAACAGGAAGC 827
Query 753 ATTAACGGTTGGGTCATGGCCTCGACCAAAGCGATGTG-TCTTCCTCAATTCATGCCTTT 811
||||| ||||| ||||| ||||| ||||||| || | ||||||||||| |||| ||||
Sbjct 828 CTTAACTGTTGGCTCATGAACTCGAACAAAGCG-TGGGGTCTTCCTCAATCCATGTCTTT 886
Query 812 AGCTAAAATTCAGGGGTCTTACTTGGACCGTGAAGGTACTTTGGAGGTAGAGATCGAATG 871
| ||||| | ||||| |||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 887 CGATAAAAATGAGGGGGCTTACTTGGATCGTGAAGGGACTTTGGAGGTAGAGATTGAATG 946
Query 872 TGAAGTTGTTAACTCC-ATCAAAAACCATCCCTGT-TTTTAGGATATCTACCATGCCATG 929
|||| || |||||| || ||||||||||||| | |||||||||||| |||||| || |
Sbjct 947 TGAAATTAAAAACTCCCAT-AAAAACCATCCCT-TCTTTTAGGATATCAACCATGTCAGG 1004
Query 930 TC 931
||
Sbjct 1005 TC 1006
> AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284469-24286145
REVERSE LENGTH=1190
Length=1190
Score = 702 bits (380), Expect = 0.0
Identities = 676/814 (83%), Gaps = 39/814 (5%)
Strand=Plus/Plus
Query 88 TTCACATTTTTCTTCACCATAA--ACATATAAGTAAGAAATGTTGTCTTTTGGTAACCTT 145
||||||| ||||||||| | || | |||||| |||||||||||| | ||| | ||
Sbjct 147 TTCACATCTTTCTTCACTACAAGCATATATAACTAAGAAATGTTG-CCTTT--T----TT 199
Query 146 ATATAAAATCAGGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACAATGGAAGGGG 205
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 200 GTA-AAAATCAGGAGATTGGTTGTTTACCCAAAAGGAAACGAAGAGGACAATGGAAAGGG 258
Query 206 CTTTGTTTCAATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGACGTGTTTGC 265
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 259 CTTTGTGTCTATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGATGTGTTTGA 318
Query 266 TTATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGT 325
||||||| ||||||||||||||| | || |||| || ||||||||||| || ||||||||
Sbjct 319 TTATCTCTCTTTCTTTGTCTTTAACAAGAAAGACAACAAGTACCTCTCAATCCAAGATGT 378
Query 326 TGAAGTAAAGCGTTTCAATACTTCTAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGAT 385
|||||| |||||||||| | ||||||||||||||||||||||| |||||||| | ||| |
Sbjct 379 TGAAGTTAAGCGTTTCAGTTCTTCTAAAACGGTTTGGGGATTGCCAAAAGCTATGTCGCT 438
Query 386 TGAAACACTCAAAGACTGTGCAAAGGGATTTATCTTGTACGGAGAACTACATGAGTTTGG 445
||||||| ||| ||| |||||||||||||||| || | ||||||| | |||||||||
Sbjct 439 TGAAACATTCACTGACCCTGCAAAGGGATTTATCGTGGAAGGAGAACCATGTGAGTTTGG 498
Query 446 TGCTCATGTGAAGATTGTTTCA-CGACCCGTCTCTTTTGGTGAAGA-TCTCCCTTTCCAC 503
||||||||||||||||| |||| | ||||||| || ||| ||| || ||||||||| |||
Sbjct 499 TGCTCATGTGAAGATTGCTTCATC-ACCCGTCCCTGTTGATGA-GAATCTCCCTTTTCAC 556
Query 504 AAATTCTCATGGA-CTATTCGTGATTTCTCCCTTCTCAGACAGAATGATTGCGTTTCGAA 562
|||||||| |||| | |||||||||||||| |||| | ||||||||||||| | || ||
Sbjct 557 AAATTCTCTTGGAGC-ATTCGTGATTTCTCTGTTCTGAAACAGAATGATTGCATATCTAA 615
Query 563 AACCTTT-CACATGGGAGAAAAGGATTGGACTCTAACTTTGTATCCAAAGGGGGACTCTA 621
||||||| || ||||||| |||| |||||||||||||| ||||||||||||| ||||||
Sbjct 616 AACCTTTGCA-ATGGGAGGAAAGAATTGGACTCTAACTGTGTATCCAAAGGGAGACTCT- 673
Query 622 GAG-CAGATGGCGAGTTATCCCAGCATTTGCATTTAGCCGACGGTGAAA-CTTTATT-CA 678
||| ||||| |||||| | | || | ||||||||||| ||||||||| ||| || |
Sbjct 674 GAGGCAGATAACGAGTTCTGCAAGTACTTGCATTTAGCTGACGGTGAAGTCTT-ATCGCC 732
Query 679 AGGGTGAGCTGATTTTCGTTCGAGTA-AACCTGCAGG--TTCTAGACCCGCGTGGATCCG 735
|| |||| |||||| ||| |||| | ||| | ||| || |||||||||||||||||
Sbjct 733 TGG-TGAGATGATTTCCGTGCGAGCACAAC-TA-AGGGCTT-TAGACCCGCGTGGATCCA 788
Query 736 ATCACCTAACAGGAAG-CATT-AACGGTTGGGTCATGGCCTCGACCAAAGCGATGTGTCT 793
| ||| ||||| | | || ||| | || ||||||| |||||||||||| | || |
Sbjct 789 AACACAAAACAGTCTGGC-TTCAACAAT-GGATCATGGCAGCGACCAAAGCGAGGGGTAT 846
Query 794 TCCTCAATTCATGCCTTTAGCTAAAATTCAGG-GGTCTTACTTGGACCGTGAAGGTACTT 852
|||||||| | || |||||||| | |||||| || |||||||||| ||||| |||||
Sbjct 847 TCCTCAATCCTTGTCTTTAGCTGATCTTCAGGAGG-CTTACTTGGA---TGAAGATACTT 902
Query 853 TGGAGGTAGAGATCGAATGTGAAGTTGTTAACTC 886
|| | || |||||||||||||||||||| |||||
Sbjct 903 TGAATGTGGAGATCGAATGTGAAGTTGTGAACTC 936
> AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679
REVERSE LENGTH=687
Length=687
Score = 372 bits (201), Expect = 4e-102
Identities = 246/268 (92%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 157 GGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACAATGGAAGGGGCTTTGTTTCAA 216
||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 137 GGAGATTGGTTGTTTACCCGAAAGGAAACGAAGCTGACAATGGAAGGGGCTTTGTTTCAA 196
Query 217 TGTATGTGGAATGTCTCTCATCCACAACACCACCCATTGACGTGTTTG-CTTATCTCACT 275
||||||||||||| |||||||| ||||||||||||||||| ||||||| || ||||||||
Sbjct 197 TGTATGTGGAATGCCTCTCATCGACAACACCACCCATTGATGTGTTTGTCT-ATCTCACT 255
Query 276 TTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGAAGTAAAG 335
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 256 TTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTCTATTCAAGATGTTGAAGTTAAG 315
Query 336 CGTTTCAATACTTCTAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGATTGAAACACTC 395
| |||||| | || ||||||||||||||||||||| ||| |||| || |||||||||||
Sbjct 316 AGGTTCAATTCCTCAAAAACGGTTTGGGGATTGTCACAAGTTCTTCCGGTTGAAACACTC 375
Query 396 AAAGACTGTGCAAAGGGATTTATCTTGT 423
|||||| |||||||||||||||||||||
Sbjct 376 AAAGACCGTGCAAAGGGATTTATCTTGT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5