BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925432
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65290.1 | Symbols: mtACP2 | mitochondrial acyl carrier prot... 673 0.0
> AT1G65290.1 | Symbols: mtACP2 | mitochondrial acyl carrier protein
2 | chr1:24248828-24250421 REVERSE LENGTH=696
Length=696
Score = 673 bits (364), Expect = 0.0
Identities = 403/422 (95%), Gaps = 1/422 (0%)
Strand=Plus/Plus
Query 1 TTACTCTGCAATACACAGCAATGGCGGCGAGAGGTGCTTTGCTTCGATACCTTAGAGTCA 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 36 TTACTCTGCAATACACAGCAATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCA 95
Query 61 ACGTCAATCCAACAATTCAAAACCCTAGAGCATGTGCACTTCCTTTCTCCGTTCTTCTTC 120
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||
Sbjct 96 ACGTCAATCCAACAATTCAAAACCCTAGAGAATGTGTACTTCCTTTCTCCATTCTCCTTC 155
Query 121 GCCGTTTCTCTGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACTGATCGCG 180
| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 156 GTCGTTTCTCCGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAG 215
Query 181 TTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCA 275
Query 241 ATTTCCAAAACGATCTCGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGG 300
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATTTCCAAAATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGG 335
Query 301 AGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCGATCAATC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 336 AGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATC 395
Query 361 TAGCTGTTGATTTTATTGCTTCTCATCCTCAGGCTAAGT-AAAAGAGAAATAAATTCTTC 419
|||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 396 TAGCCGTTGACTTTATTGCTTCTCATCCTCAGGCTAAGTGAAAAGAGAAACAAATTCTTC 455
Query 420 GG 421
||
Sbjct 456 GG 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19956296353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5