BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925439 Length=362 Score E Sequences producing significant alignments: (Bits) Value AT2G20000.1 | Symbols: HBT, CDC27b | CDC27 family protein | ch... 313 9e-85 > AT2G20000.1 | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632078-8637300 REVERSE LENGTH=2881 Length=2881 Score = 313 bits (169), Expect = 9e-85 Identities = 203/219 (93%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 81 AGGGGCTGCTGAGGAAGCAACTGCGGTTTTTGGTGAAACAGCTGCTCTCTCCATTCAAAA 140 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 832 AGGTGCTGCTGAGGAAGCAACTGCAGTTTTTGGTGAAACAGCTGCTCTCTCCATTCAAAA 891 Query 141 GCAGTACATGCAACAACTGTCAACTTCCCTCGGTTTAAACACGTACAATGAGGAACGTAA 200 |||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 892 GCAGTATATGCAACAACTGTCAACTTCCCTCGGCTTAAACACTTACAACGAGGAACGTAA 951 Query 201 TTCAAATTCTACTAAAGACCC-AGGTTCTGAGGATTATAGTCTGAGGCAGTCTAAACACA 259 ||||| |||||||||| || | || |||||| |||||||||| |||||||||||||||| Sbjct 952 TTCAACTTCTACTAAAAACACGAG-TTCTGAAGATTATAGTCCAAGGCAGTCTAAACACA 1010 Query 260 CACAAAGCCATGGCCTTAAAAGATATCTCTGGAAATTTC 298 |||||||||||||||||||| |||||||| ||||||||| Sbjct 1011 CACAAAGCCATGGCCTTAAA-GATATCTCCGGAAATTTC 1048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16990499162 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5