BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925439
Length=362
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20000.1 | Symbols: HBT, CDC27b | CDC27 family protein | ch... 313 9e-85
> AT2G20000.1 | Symbols: HBT, CDC27b | CDC27 family protein |
chr2:8632078-8637300 REVERSE LENGTH=2881
Length=2881
Score = 313 bits (169), Expect = 9e-85
Identities = 203/219 (93%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 81 AGGGGCTGCTGAGGAAGCAACTGCGGTTTTTGGTGAAACAGCTGCTCTCTCCATTCAAAA 140
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 832 AGGTGCTGCTGAGGAAGCAACTGCAGTTTTTGGTGAAACAGCTGCTCTCTCCATTCAAAA 891
Query 141 GCAGTACATGCAACAACTGTCAACTTCCCTCGGTTTAAACACGTACAATGAGGAACGTAA 200
|||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 892 GCAGTATATGCAACAACTGTCAACTTCCCTCGGCTTAAACACTTACAACGAGGAACGTAA 951
Query 201 TTCAAATTCTACTAAAGACCC-AGGTTCTGAGGATTATAGTCTGAGGCAGTCTAAACACA 259
||||| |||||||||| || | || |||||| |||||||||| ||||||||||||||||
Sbjct 952 TTCAACTTCTACTAAAAACACGAG-TTCTGAAGATTATAGTCCAAGGCAGTCTAAACACA 1010
Query 260 CACAAAGCCATGGCCTTAAAAGATATCTCTGGAAATTTC 298
|||||||||||||||||||| |||||||| |||||||||
Sbjct 1011 CACAAAGCCATGGCCTTAAA-GATATCTCCGGAAATTTC 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16990499162
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5