BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925444

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00770.1 | Symbols: RPS8 | ribosomal protein S8 | chrC:80068...   715    0.0  


> ATCG00770.1 | Symbols: RPS8 | ribosomal protein S8 | chrC:80068-80472 
REVERSE LENGTH=405
Length=405

 Score =  715 bits (387),  Expect = 0.0
 Identities = 399/405 (99%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  188  ATGGGGAAAGACACTATTGCTGATATAATAACCTCTATACGAAATGCTGACATGAATAGA  247
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGGAAAGACACCATTGCTGATATAATAACCTCTATACGAAATGCTGACATGAATAGA  60

Query  248  AAAGGAACGGTTCGGATAGGATCGACTAACATCACCGAAAGTATTGTTAAAATCCTTTTA  307
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   AAAGGAACGGTTCGGATAGGATCGACTAACATCACGGAAAGTATTGTTAAAATCCTTTTA  120

Query  308  CGAGAGGGTTTTATCGAAAACGTAAGGAAACATCGCGAAAGCAACCAATATTTTTTGATT  367
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  121  CGAGAGGGTTTTATCGAAAACGTAAGGAAACATCGCGAAAACAACCAATATTTTTTGATT  180

Query  368  TTAACCCTAAGACACAGACGAAATAAGAAAGAATCCTATAAAACGATTTTAAATTTAAAG  427
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  TTAACCCTAAGACATAGACGAAATAAGAAAGAATCCTACAAAACGATTTTAAATTTAAAG  240

Query  428  AGAATAAGTCGGCCGGGTCTACGAATCTATTCTAACTCTCAACGAATTCCACGAATTTTA  487
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AGAATAAGTCGACCGGGTCTACGAATCTATTCTAACTCTCAACGAATTCCACGAATTTTA  300

Query  488  GGCGGAATAGGAATTGTAATCCTTTCGACTTCTCAAGGTATAATGACAGACCGAGAAGCT  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGCGGAATAGGAATTGTAATCCTTTCGACTTCTCAAGGTATAATGACAGACCGAGAAGCT  360

Query  548  CGACTAAAAAGAATCGGCGGAGAAATTTTGTGTTATATATGGTAA  592
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CGACTAAAAAGAATCGGCGGAGAAATTTTGTGTTATATATGGTAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5