BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925461

Length=906
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00580.1 | Symbols: PSBE | photosystem II reaction center pr...   460    8e-129
  ATCG00570.1 | Symbols: PSBF | photosystem II reaction center pr...   191    1e-47 


> ATCG00580.1 | Symbols: PSBE | photosystem II reaction center 
protein E | chrC:64071-64322 REVERSE LENGTH=252
Length=252

 Score =  460 bits (249),  Expect = 8e-129
 Identities = 251/252 (99%), Gaps = 0/252 (0%)
 Strand=Plus/Plus

Query  543  ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG  602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG  60

Query  603  GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC  662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC  120

Query  663  GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA  722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA  180

Query  723  CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGACGAATTTAGT  782
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGATGAATTTAGT  240

Query  783  AGATCTTTTTAG  794
            ||||||||||||
Sbjct  241  AGATCTTTTTAG  252


> ATCG00570.1 | Symbols: PSBF | photosystem II reaction center 
protein F | chrC:63942-64061 REVERSE LENGTH=120
Length=120

 Score =  191 bits (103),  Expect = 1e-47
 Identities = 103/103 (100%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  804  ATGACTATAGATAGGACCTATCCAATTTTTACAGTGCGCTGGTTGGCTGTTCATGGACTA  863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTATAGATAGGACCTATCCAATTTTTACAGTGCGCTGGTTGGCTGTTCATGGACTA  60

Query  864  GCTGTACCTACCGTTTCTTTTTTGGGGTCAATATCAGCAATGC  906
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCTGTACCTACCGTTTCTTTTTTGGGGTCAATATCAGCAATGC  103



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44256283507


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5