BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925462

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00550.1 | Symbols: PSBJ | photosystem II reaction center pr...   215    3e-55
  ATCG00560.1 | Symbols: PSBL | photosystem II reaction center pr...   161    4e-39


> ATCG00550.1 | Symbols: PSBJ | photosystem II reaction center 
protein J | chrC:63538-63660 REVERSE LENGTH=123
Length=123

 Score =  215 bits (116),  Expect = 3e-55
 Identities = 121/123 (98%), Gaps = 1/123 (1%)
 Strand=Plus/Plus

Query  163  ATGGCTGATACTACTGGAAGGA-TCCTCTTTGGGTAATAGGTACTGTAGCTGGTATTCCT  221
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  1    ATGGCTGATACTACTGGAAGGATTCCTCTTTGGGTAATAGGTACTGTAGCTGGTATTCTT  60

Query  222  GTGATCGGTTTAATAGGTATTTTCTTTTATGGTTCATATTCAGGATTAGGTTCATCCCTG  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTGATCGGTTTAATAGGTATTTTCTTTTATGGTTCATATTCAGGATTAGGTTCATCCCTG  120

Query  282  TAG  284
            |||
Sbjct  121  TAG  123


> ATCG00560.1 | Symbols: PSBL | photosystem II reaction center 
protein L | chrC:63804-63920 REVERSE LENGTH=117
Length=117

 Score =  161 bits (87),  Expect = 4e-39
 Identities = 87/87 (100%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  38   ATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTACCAGTCTCTATTGG  97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTACCAGTCTCTATTGG  60

Query  98   GGGTTATTACTCATTTTTGTACTTGCT  124
            |||||||||||||||||||||||||||
Sbjct  61   GGGTTATTACTCATTTTTGTACTTGCT  87



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5