BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925471

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00440.1 | Symbols: NDHC | NADH:ubiquinone/plastoquinone oxi...   660    0.0  


> ATCG00440.1 | Symbols: NDHC | NADH:ubiquinone/plastoquinone oxidoreductase, 
chain 3 protein | chrC:50001-50363 REVERSE LENGTH=363
Length=363

 Score =  660 bits (357),  Expect = 0.0
 Identities = 361/363 (99%), Gaps = 0/363 (0%)
 Strand=Plus/Plus

Query  490  ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT  549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT  60

Query  550  CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA  609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA  120

Query  610  CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC  669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC  180

Query  670  CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT  240

Query  730  CCGTGGGCAATGAGTTTCGATGTACTGGGGGCATCTGCTTTTATAGAAGCTTTCATTTTC  789
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  CCGTGGGCAATGAGTTTCGATGTACTGGGGGTATCTGCTTTTATAGAAGCTTTCATTTTC  300

Query  790  GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAGTGGTCT  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  301  GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCT  360

Query  850  TAG  852
            |||
Sbjct  361  TAG  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42598556656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5