BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925475
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00380.1 | Symbols: RPS4 | chloroplast ribosomal protein S4 ... 1109 0.0
ATCG00390.1 | Symbols: TRNT.2 | tRNA-Thr | chrC:46213-46285 REV... 135 7e-31
> ATCG00380.1 | Symbols: RPS4 | chloroplast ribosomal protein S4
| chrC:45223-45828 REVERSE LENGTH=606
Length=606
Score = 1109 bits (600), Expect = 0.0
Identities = 604/606 (99%), Gaps = 0/606 (0%)
Strand=Plus/Plus
Query 596 ATGTCACGTTACCGAGGGCCTCGTTTTaaaaaaaTACGCCGTCTGGGGGCTTTACCGGGA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGTTACCGAGGGCCTCGTTTTAAAAAAATACGCCGTCTGGGGGCTTTACCGGGA 60
Query 656 CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTaaaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTAAAA 120
Query 716 aaaTCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT 180
Query 776 ACAGAACGCCAATTACTTAAATATGTGCGTATCGCCGGAAAAGCCAAGGGGTCAACAGGT 835
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 ACAGAACACCAATTACTTAAATATGTGCGTATAGCCGGAAAAGCCAAGGGGTCAACAGGT 240
Query 836 CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG 300
Query 896 GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT 360
Query 956 CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT 420
Query 1016 GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG 480
Query 1076 CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT 540
Query 1136 AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG 600
Query 1196 ACTTAA 1201
||||||
Sbjct 601 ACTTAA 606
> ATCG00390.1 | Symbols: TRNT.2 | tRNA-Thr | chrC:46213-46285 REVERSE
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 7e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136 GCCCGCTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGATGGTCATCGGTTCGATT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCCGCTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGATGGTCATCGGTTCGATT 60
Query 196 CCGATAGCCGGCT 208
|||||||||||||
Sbjct 61 CCGATAGCCGGCT 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5