BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925479

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00330.1 | Symbols: RPS14 | chloroplast ribosomal protein S1...   555    2e-157


> ATCG00330.1 | Symbols: RPS14 | chloroplast ribosomal protein 
S14 | chrC:36938-37240 REVERSE LENGTH=303
Length=303

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 302/303 (99%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  94   ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGaaaaaaaaTAT  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGAAAAAAAATAT  60

Query  154  CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAA  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAA  120

Query  214  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCAT  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCAT  180

Query  274  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  240

Query  334  CACATCCTTCGGGAAATGGTTCAGGCTTGTTTGTTGCCAGGGGCAACAAGATCAAGCTGG  393
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  CACATCCTTCGGGAAATGGTTCAGGCATGTTTGTTGCCAGGGGCAACAAGATCAAGCTGG  300

Query  394  TAA  396
            |||
Sbjct  301  TAA  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23660283237


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5