BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925483

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00220.1 | Symbols: PSBM | photosystem II reaction center pr...   178    6e-44
  ATCG00210.1 | Symbols: YCF6 | electron transporter, transferrin...   167    1e-40


> ATCG00220.1 | Symbols: PSBM | photosystem II reaction center 
protein M | chrC:28707-28811 REVERSE LENGTH=105
Length=105

 Score =  178 bits (96),  Expect = 6e-44
 Identities = 102/105 (97%), Gaps = 0/105 (0%)
 Strand=Plus/Minus

Query  222  TTAATCATTTTGACTAATGGTTTTTACGTAAATTATAAGCAAAAAAGCAGTAGGAACGAG  281
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  105  TTAATCATTTTGACTAACGGTTTTTACGTAAATTATAAGCAAAAAAGCAGTAGGAACGAG  46

Query  282  AATGAAGAGTGCGGTAGCAATAAATGCAAGAATATTGACTTCCAT  326
            |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  45   AATGAAGAGTGCAGTAGCAATAAATGCAAGAATATTTACTTCCAT  1


> ATCG00210.1 | Symbols: YCF6 | electron transporter, transferring 
electrons within cytochrome b6/f complex of photosystem 
IIs | chrC:28089-28178 FORWARD LENGTH=90
Length=90

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 90/90 (100%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  97   ATGGATATAGTAAGTCTCGCATGGGCTGCTTTAATGGTAGTTTTTACATTTTCCCTCTCT  156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATATAGTAAGTCTCGCATGGGCTGCTTTAATGGTAGTTTTTACATTTTCCCTCTCT  60

Query  157  CTCGTAGTGTGGGGAAGAAGTGGACTCTAG  186
            ||||||||||||||||||||||||||||||
Sbjct  61   CTCGTAGTGTGGGGAAGAAGTGGACTCTAG  90



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28934868672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5