BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925488
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00150.1 | Symbols: ATPI | ATPase, F0 complex, subunit A pro... 1363 0.0
AT3G33000.1 | Symbols: | pseudogene, ATP synthase A subunit, b... 1195 0.0
> ATCG00150.1 | Symbols: ATPI | ATPase, F0 complex, subunit A protein
| chrC:14021-14770 REVERSE LENGTH=750
Length=750
Score = 1363 bits (738), Expect = 0.0
Identities = 746/750 (99%), Gaps = 0/750 (0%)
Strand=Plus/Plus
Query 65 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 60
Query 125 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 120
Query 185 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAACGATT 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAGCGATT 180
Query 245 CGCAATCCACAAACCATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCAATCCACAAACAATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 240
Query 305 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 300
Query 365 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 360
Query 425 ATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTT 420
Query 485 GCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTA 480
Query 545 GGGTATTTTAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAA 604
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGTATTTCAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAA 540
Query 605 GATTTTACAAAACCTCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAA 664
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATTTTACAAAACCCCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAA 600
Query 665 TTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTC 660
Query 725 CTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTAT 720
Query 785 ATAGGTGAGTCTATGGAAGGTCATCATTAA 814
||||||||||||||||||||||||||||||
Sbjct 721 ATAGGTGAGTCTATGGAAGGTCATCATTAA 750
> AT3G33000.1 | Symbols: | pseudogene, ATP synthase A subunit,
blastp match of 68% identity and 1.3e-82 P-value to SP|P06288|ATPI_TOBAC
ATP synthase A chain precursor (EC 3.6.3.14) (Subunit
IV). (Belladonna, Deadly nightshade) {Atropa belladonna}
| chr3:13537077-13537851 REVERSE LENGTH=775
Length=775
Score = 1195 bits (647), Expect = 0.0
Identities = 737/780 (94%), Gaps = 7/780 (1%)
Strand=Plus/Plus
Query 65 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATTT 60
Query 125 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 184
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 61 GGTGTAGAAGTAGGCCAACATTTCTACTGGCAAATAGGGGGTTTCCGGGTCCATGCCCAA 120
Query 185 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAACGATT 244
||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 121 GTTCTTAGTAATTCTTGGGTTGTAATTGCTATCTTATTAGGTTCTGCAGTTCTAGCGATT 180
Query 245 CGCAATCCACAAACCATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 304
| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CACAATCCACAAACAATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTGCTTGAATTC 240
Query 305 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 364
|||||| || | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 ATTCGAAACATAAGTAAAACCCAGATTGGACAAGAATATGGTCCATGGGTTCCCTTTATT 300
Query 365 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 424
||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 301 GGAACCCTGTTTTTACT-ATTTTTGTTTCTAATTGGTCAGGAGCCCTTTTAC--TGGAAA 357
Query 425 ATTATCCAGTTACCT-CAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGT 483
|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 ATTATCCAGTTAT-TACAAGGGGAGTTAGTAGCACCAACGAATGATATAAATACGACGGT 416
Query 484 TGCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATT 543
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 417 TGTTTTAGCTTTACTCACATTAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAACGATT 476
Query 544 AGGGTATTTTAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGA 603
|||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 477 AGGGAATTTCAGTAAATACATTCAACCAACCCCAATTCTTTTACACATTAATATCTTAGA 536
Query 604 AGATTTTACAAAACCTCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGA 663
||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 537 AGATTTTACGAAACCCCTATCACTTAGTTTTTAACTTTTCGGAAATATATTACCCGATGA 596
Query 664 ATTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTT 723
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 ATTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGCGGTTCCTATACCTGTTATGTT 656
Query 724 CCTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTA 783
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 CCTTGGATTGTTTACAAGCGGGATTCAAGCTCTCGTTTTTGCCACTTTAGCTGCGGCTTA 716
Query 784 TATAGGTGAGTCTATGGAAGGTCATCATTAACGG-tttttttCAAATATTCTTTTTTAGG 842
||||||||||||||||||||||||||||||| || ||||||| || ||||||| ||||||
Sbjct 717 TATAGGTGAGTCTATGGAAGGTCATCATTAATGGGTTTTTTTTAA-TATTCTTGTTTAGG 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5