BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925489
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00140.1 | Symbols: ATPH | ATP synthase subunit C family pro... 449 1e-125
AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, b... 387 1e-106
> ATCG00140.1 | Symbols: ATPH | ATP synthase subunit C family protein
| chrC:13262-13507 REVERSE LENGTH=246
Length=246
Score = 449 bits (243), Expect = 1e-125
Identities = 245/246 (99%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 114 ATGAATCCACTGGTTTCTGCTGCTTCGGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCCACTGGTTTCTGCTGCTTCGGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCT 60
Query 174 TCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCGGGTCAAGCTGTCGAAGGTATCGCG 233
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTATTGGACCTGGAGTCGGTCAAGGTACAGCTGCGGGTCAAGCTGTCGAAGGTATCGCG 120
Query 234 AGACAACCTGAGGCAGAAGGAAAAATACGAGGTACTTTATTGCTTAGTTTGGCTTTTATG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACAACCTGAGGCAGAAGGAAAAATACGAGGTACTTTATTGCTTAGTTTGGCTTTTATG 180
Query 294 GAAGCTTTAACAATTTATGGCCTGGTTGTAGCATTAGCGCTTTTATTTGCGAATCCTTTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGCTTTAACAATTTATGGCCTGGTTGTAGCATTAGCGCTTTTATTTGCGAATCCTTTT 240
Query 354 GTTTAA 359
||||||
Sbjct 241 GTTTAA 246
> AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit,
blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC
ATP synthase C chain (EC 3.6.3.14) (Lipid-binding
protein) (Subunit III). (Common tobacco) {Nicotiana tabacum}
| chr3:13534183-13536711 REVERSE LENGTH=2529
Length=2529
Score = 387 bits (209), Expect = 1e-106
Identities = 253/273 (93%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 1 TTTG-GtttttttGGCTGGATGAATCTTAGCGATTACTTAATTATAATTCCGTCCTAAGT 59
|||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 17 TTTGTGTTTTTTTGGCTGGATTAATCTTAGCGATTACTTAATTAGAATTACGTCCTAAG- 75
Query 60 CATTGAATGATTGTATCATTAACTATTTCTTTATTTTGGTGTGAGGAACTTATCATGAAT 119
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 76 ----GGATGATTGTATCATTAACTATTTCTTTATTTTTGTGTGAGGAACTTATCATGAAT 131
Query 120 CCAC-TGGTTTCTGCTGCTTCGGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTAT 178
|||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 132 CCACAT-GTTTCTGCTGCTTCGGTTATTGTTGCCGGGTTGGCTGTTGGGCTTGCTTCTAT 190
Query 179 TGGACCTGGAGTTGGTCAAGGTACAGCTGCGGGTCAAGCTGTCGAAGGTATCGCGAGACA 238
|| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 191 TGAACCTGGAGTCAGTCAAGGTACAACTGCGGGTCAAGCTGTCGAAGGTATCGTGAGACA 250
Query 239 ACCTGAGGCAGAAGGAAAAATACGAGGTACTTT 271
|||||||||||||||||||||||||||||||||
Sbjct 251 ACCTGAGGCAGAAGGAAAAATACGAGGTACTTT 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5