BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925494

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00070.1 | Symbols: PSBK | photosystem II reaction center pr...   327    5e-89


> ATCG00070.1 | Symbols: PSBK | photosystem II reaction center 
protein K precursor | chrC:7017-7202 FORWARD LENGTH=186
Length=186

 Score =  327 bits (177),  Expect = 5e-89
 Identities = 183/186 (98%), Gaps = 0/186 (0%)
 Strand=Plus/Plus

Query  318  ATGCTTAATATATTTAATTTGATCTGTATTTGTTTTAATTCCGCCCTTTTTTCAAGCACT  377
            ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||
Sbjct  1    ATGCTTAATATATTTAATTTGATCTGTATTTTTTTTAATTCTACCCTTTTTTCAAGCACT  60

Query  378  TTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATG  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATG  120

Query  438  CCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTT  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTT  180

Query  498  CGATAA  503
            ||||||
Sbjct  181  CGATAA  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5