BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925497

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00020.1 | Symbols: PSBA | photosystem II reaction center pr...   516    7e-146


> ATCG00020.1 | Symbols: PSBA | photosystem II reaction center 
protein A | chrC:383-1444 REVERSE LENGTH=1062
Length=1062

 Score =  516 bits (279),  Expect = 7e-146
 Identities = 290/295 (98%), Gaps = 1/295 (0%)
 Strand=Plus/Plus

Query  48   ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGG  107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGG  60

Query  108  ATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACC  167
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACC  120

Query  168  TTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATT  227
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATT  180

Query  228  GATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGT  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGT  240

Query  288  GCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG-AAG  341
            ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct  241  GCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAG  295



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5