BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925502
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl t... 856 0.0
AT5G35796.1 | Symbols: | pseudogene, similar to Putative prote... 285 5e-76
AT1G65250.1 | Symbols: | Protein kinase superfamily protein | ... 268 5e-71
AT1G65190.1 | Symbols: | Protein kinase superfamily protein | ... 250 2e-65
> ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl
transferase subunit beta | chrC:57075-58541 FORWARD LENGTH=1467
Length=1467
Score = 856 bits (463), Expect = 0.0
Identities = 483/493 (98%), Gaps = 0/493 (0%)
Strand=Plus/Plus
Query 240 tttttttATAGTTATTGTAGTTCTAGTTATCTGAATAATAGATCTAAAGGTGACAACGAT 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 349 TTTTTTTATAGTTATTGTAGTTCTAGTTATCTAAATAATAGATCTAAAGGTGACAACGAT 408
Query 300 CTGCACTATGATCCTTACATTAAGGATACTAAATATAATTGTACTAATCACATTAATAGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CTGCACTATGATCCTTACATTAAGGATACTAAATATAATTGTACTAATCACATTAATAGT 468
Query 360 TGCATTGATTCTTATTTTCGTTCTTACATCTGTATTGATAGTAACTTTTTAAGCGATAGT 419
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 469 TGCATTGATTCTTATTTTCGTTCTTACATCTGTATTGATAATAACTTTTTAATCGATAGT 528
Query 420 AATAATTCCAATGAAAGTTACATTTATAATTTCATTTGTAGTGAAAGTGGAAAGATTCGT 479
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 529 AATAATTTTAATGAAAGTTACATTTATAATTTCATTTGTAGTGAAAGCGGAAAGATTCGT 588
Query 480 GAAAGCAAAAATTACAAGATAAGAACTAATAGGAATCGTAGTAATTTAATAAGTTCTAAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GAAAGTAAAAATTACAAGATAAGAACTAATAGGAATCGTAGTAATTTAATAAGTTCTAAG 648
Query 540 GATTTTGATATAACTCAAAACTACAATCAATTGTGGATTCAATGCGACAATTGTTATGGA 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GATTTCGATATAACTCAAAACTACAATCAATTGTGGATTCAATGCGACAATTGTTATGGA 708
Query 600 TTAATGTATAAGAAAGTCAAAATGAATGTTTGTGAACAATGTGGATATTATTTGAAAATG 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 709 TTAATGTATAAGAAAGTCAAAATGAATGTTTGTGAACAATGTGGACATTATTTGAAAATG 768
Query 660 AGTAGTTCAGAGAGAATCGAGCTTTCGATTGATCCGGGTACTTGGAATCCTATGGATGAA 719
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGTAGTTCAGAAAGAATCGAGCTTTCGATTGATCCGGGTACTTGGAATCCTATGGATGAA 828
Query 720 GACATGGTCTCTG 732
|||||||||||||
Sbjct 829 GACATGGTCTCTG 841
Score = 324 bits (175), Expect = 1e-87
Identities = 216/233 (93%), Gaps = 13/233 (6%)
Strand=Plus/Plus
Query 21 ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGCGAG 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGTGAG 60
Query 81 CTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCAT 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCGT 120
Query 141 TTTATATATGATATGGATAAAAACTTTTATGGTTGGGGTGAGCGTTCTAGTTATTC--C- 197
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 121 TTTATATATGATATGGATAAAAACTTTTATGGTTGGGATGAGCGTTCTAGTTATTCTTCT 180
Query 198 A---AT---AAT---GTTGATCTTTTAGTTAGCTCCAAGGACATTCA-AAttt 240
| || ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 181 AGTTATTCCAATAATGTTGATCTTTTAGTTAGCTCCAAGGACATTCGCAATTT 233
> AT5G35796.1 | Symbols: | pseudogene, similar to Putative protein
kinase, blastp match of 29% identity and 1.6e-16 P-value
to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944 Putative
protein kinase {Oryza sativa (japonica cultivar-group)} | chr5:13968537-13969932
REVERSE LENGTH=1396
Length=1396
Score = 285 bits (154), Expect = 5e-76
Identities = 195/214 (91%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 732 GAAGACGGA-CGAATCCAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAAT 790
|||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GAAGACCGATC-AATGGAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAAT 933
Query 791 TTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCCGAATGCTCTCACTGAGATGCATCGG 850
||| ||| ||||||||||||||||| |||||||||||||| | |||||||||||||| ||
Sbjct 934 TTCCGAAGAAGAGCTTTGTCAAATGAAAGCTTTCCGAATGTTGTCACTGAGATGCATGGG 993
Query 851 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGCCAAAGAATTAAAGAAGATCCAAAG 910
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 994 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGTCAAAGAACTAAAGAAAATCCAAAG 1053
Query 911 ATCTCTTAATATGTAACGACTCTTCTTCTCCTTC 944
||||||| | | ||||||||||||||||| |||
Sbjct 1054 ATCTCTT--T-T-TAACGACTCTTCTTCTCTTTC 1083
> AT1G65250.1 | Symbols: | Protein kinase superfamily protein
| chr1:24234338-24235808 FORWARD LENGTH=1471
Length=1471
Score = 268 bits (145), Expect = 5e-71
Identities = 192/214 (90%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 732 GAAGACGGACGAATCCAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAATT 791
|||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 941 GAAGACAGACCAATGGAAGAGATTGCAGATTCAAAGATGATAGAAAAGATGGGTCAAATT 1000
Query 792 TCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCC-GAATGCTCTCACTGAGATGCATCGG 850
||||||||||||| |||||||||| |||||||| ||| ||| ||||||||||||| |||
Sbjct 1001 TCAGAACAAGAGCGTTGTCAAATGAAAGCTTTCTTGAA-GCTATCACTGAGATGCACCGG 1059
Query 851 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGCCAAAGAATTAAAGAAGATCCAAAG 910
|||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||
Sbjct 1060 CCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTAAACAAGATTCAAAG 1119
Query 911 ATCTCTTAATATGTAACGACTCTTCTTCTCCTTC 944
||||||| | | ||||||||||||||||| |||
Sbjct 1120 ATCTCTT--T-T-TAACGACTCTTCTTCTCTTTC 1149
> AT1G65190.1 | Symbols: | Protein kinase superfamily protein
| chr1:24215644-24217328 REVERSE LENGTH=1685
Length=1685
Score = 250 bits (135), Expect = 2e-65
Identities = 173/191 (91%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 733 AAGACGGACGAATCCAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAAT-T 791
||||| ||| ||| ||||||||||||||| |||||||||| |||| ||||||||||| |
Sbjct 973 AAGACCGACCAATGGAAGAGATTGCAGATCGAAAGATGATAAAAAATATGGGTCAAATCT 1032
Query 792 TCAGAACAAGAGCT-TTGTCAAATGGAAGCTTTCCGAATGCTCTCACTGAGATGCATCGG 850
| |||||||||||| || ||||||| |||||||||| |||||||||||||||||||| ||
Sbjct 1033 T-AGAACAAGAGCTCTT-TCAAATGAAAGCTTTCCGGATGCTCTCACTGAGATGCATGGG 1090
Query 851 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGCCAAAGAATTAAAGAAGATCCAAAG 910
|||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 1091 TCCTAGTGAAGAAGTTCCAACGATGGTGGAGGTGGCCAAAGAACTAAAGAAGATCCAAAA 1150
Query 911 ATCTCTTAATA 921
|||||||||||
Sbjct 1151 ATCTCTTAATA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5