BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925517
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65340.1 | Symbols: CYP96A3 | cytochrome P450, family 96, su... 939 0.0
AT5G52320.1 | Symbols: CYP96A4 | cytochrome P450, family 96, su... 747 0.0
AT2G21910.1 | Symbols: CYP96A5 | cytochrome P450, family 96, su... 270 1e-71
> AT1G65340.1 | Symbols: CYP96A3 | cytochrome P450, family 96,
subfamily A, polypeptide 3 | chr1:24268135-24269646 REVERSE
LENGTH=1512
Length=1512
Score = 939 bits (508), Expect = 0.0
Identities = 561/587 (96%), Gaps = 1/587 (0%)
Strand=Plus/Plus
Query 65 TTTCTTGTGGAGTGGCAAGAGACACAATAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTC 124
||||||| || ||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 927 TTTCTTG-ATAGCGGCAAGAGATACAACAAGTTCAGCACTCACTTGGTTCTTCTGGCTTA 985
Query 125 TGTCCAAGAACCCTGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGA 184
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 986 TGTCCAAGAACCCTGAGGCAATAAACAAGATCCGACAAGAGGTTAACAAGAAGATGCCGA 1045
Query 185 GGTTTGATCCCGCAGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGC 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1046 GGTTTGATCCCGCAGATTTAGAAAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGC 1105
Query 245 TAAGGTTATACCCACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTC 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1106 TAAGGTTATACCCACCAGTTCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTACTTC 1165
Query 305 CAAGTGGGCATAAAGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGA 364
|||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1166 CAAGTGGGCATAGAGTAGATGAGAAATGGAAGATTGTCATATCTATGTATGCATTAGGGA 1225
Query 365 GGATGAAATCTGTTTGGGGAGATGACGCGGAAGATTTCAGACCAGAGAGATGGATTTCAT 424
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1226 GGATGAAATCTGTTTGGGGAGATGACGCAGAAGATTTCAGACCAGAGAGATGGATTTCAG 1285
Query 425 ACAGTGGAAGGTTAAAACAAGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAA 484
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1286 ACAGTGGAAGGTTAAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCCGGTCCAA 1345
Query 485 GAGCTTGCTTGGGAAAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGCGGAAATCA 544
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1346 GAGCTTGCTTGGGGAAAAAGTTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCA 1405
Query 545 TACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAACCTGTTCCTTCTGTTC 604
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1406 TACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAACCAGTTCCTTCTGTTC 1465
Query 605 TTTTTCGCATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAG 651
||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1466 TTTTTCGTATGCAACATGGTCTCAAAGTTAATATCACTAGGATCTAG 1512
> AT5G52320.1 | Symbols: CYP96A4 | cytochrome P450, family 96,
subfamily A, polypeptide 4 | chr5:21244978-21246682 REVERSE
LENGTH=1705
Length=1705
Score = 747 bits (404), Expect = 0.0
Identities = 544/611 (89%), Gaps = 12/611 (2%)
Strand=Plus/Plus
Query 67 TCTTGTG-GAGTGGCAAGAGACACAATAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCT 125
||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 987 TCTTGTGATAGCGGCAAGAGACACAACCAGCTCAGCTCTCACTTGGTTTTTCTGGCTTCT 1046
Query 126 GTCCAAGAACCCTGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAG 185
|| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |
Sbjct 1047 CTCTAAGAACCCTGAAGCAATGACCAAGATCCGACAAGAGATTAACAAGAAGATGCCAAA 1106
Query 186 GTTTGATCCCGCAGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCT 245
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1107 GTTTGATCCGGCAGATTTAGACAAGCTCGTGTACCTAGACGGTGCCGTGTGTGAGACGCT 1166
Query 246 AAGGTTATACCCACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCC 305
|||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1167 AAGGCTATACCCATCAGTCCCATTCAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCC 1226
Query 306 AAGTGGGCATAAAGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAG 365
|||||| |||||||| ||| ||||||||| | | || || |||| ||| ||||||| ||
Sbjct 1227 AAGTGGTCATAAAGTTGATAAGAATTGGAGGGTAGTAATCCCTATTTATTCATTAGGCAG 1286
Query 366 GATGAAATCTGTTTGGGGAGATGACGCGGAAGATTT-CAGACCAGAGAGATGGATTTCAT 424
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 1287 GATGAAATCTGTTTGGGGAGATGACGCAGAAGATTTTC-GACCAGAGAGATGGATTTCAG 1345
Query 425 ACAGTGGAAGGTTAAAACAAGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAA 484
||||||||| ||| | |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1346 ACAGTGGAATGTTGAGACAAGAGTCTTCATATAAGTTTTTGGCGTTTAACGCTGGTCCAA 1405
Query 485 GAGCTTGCTTGGGAAAAA-AGTTAACGTTCTTGCAGATGAAGACAGTGGCTG-CGGAAAT 542
|| |||||||||| |||| | ||||| |||||||||||||||||||| || | || ||||
Sbjct 1406 GAACTTGCTTGGGGAAAAGA-TTAACATTCTTGCAGATGAAGACAGTAGCGGTCG-AAAT 1463
Query 543 CAT-ACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAA-CCTGTTCCTTCT 600
||| | ||||||||||||| ||||||||||||||||||||| || || || ||||||||
Sbjct 1464 CATTA-GAAACTATGACATTAAGGTCGTTGAAGGGCACAAA-CCAAAACCAGTTCCTTCC 1521
Query 601 GTTCTTTTTCGCATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAGTAACAGTTT 660
|||||| ||||||||||||||||||||||||||| | |||||||||| |||| | | |||
Sbjct 1522 GTTCTTCTTCGCATGCAACATGGTCTCAAAGTTAGTGTCACTAAGATTTAGTGATA-TTT 1580
Query 661 TATTTTTATTT 671
||||||| |||
Sbjct 1581 TATTTTTGTTT 1591
> AT2G21910.1 | Symbols: CYP96A5 | cytochrome P450, family 96,
subfamily A, polypeptide 5 | chr2:9341498-9343030 FORWARD LENGTH=1533
Length=1533
Score = 270 bits (146), Expect = 1e-71
Identities = 425/556 (76%), Gaps = 33/556 (6%)
Strand=Plus/Plus
Query 101 CTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCCTGAAGCAATGAACAAGATTCGAC 160
||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || |
Sbjct 956 CTCTCACTTGGTTCTTCTGGCTTCTCTCCAAGAACCCTGAAGCTGTGACCAAGATCCGCC 1015
Query 161 AAGAGGT-TA-AC-AA--GA--A-GATGCC-G-A-G-GTTT-GATCCCG-CAGATTTAGA 206
||||| | | || || | | ||| || | | | |||| ||| | | || | ||| |
Sbjct 1016 AAGAGATCAACACAAATCTACCAGGAT-CCGGAATGAGTTTAGATGCAGACA-AGTTAAA 1073
Query 207 CAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGA-CGCTAAGGTTATACCCACCAGTCC 265
|||| | || ||| |||| ||||| ||||||| | | ||| | | ||| | ||| |||
Sbjct 1074 CAAGATGGTATATTTACATGGTGCATTGTGTGA-ATCACTACGCCTCTACGCGCCAATCC 1132
Query 266 CATT-TA-ACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAAAGTCGA 323
| || | | | ||| | || ||||| ||| |||||||||||||| || | |||||
Sbjct 1133 CGTTCGAGA-GA-AAGACTCCCATAAAGCAAGATGTGCTTCCAAGTGGACACATGGTCGA 1190
Query 324 TGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTTTGGGG 383
| | |||||||||||| | | ||| | |||||||| |||||||||| || || |||||
Sbjct 1191 TAAAAATTGGAAGATTTTGTTCTCTGTCTATGCATTGGGGAGGATGAGGTCCGTGTGGGG 1250
Query 384 AGATGACGCGGAAGATTTCAGACCAGAGAGATGGAT-T-TCATA-CAGTGGAAGG-TTAA 439
| | |||||| || |||| ||||||||||||||| | | | | | ||| ||| || |
Sbjct 1251 ACAGGACGCGTCTGAATTCAAACCAGAGAGATGGATCTCTGAGAGAAATGG-AGGCTTGA 1309
Query 440 AACAAGAACCTTCATAT-AAGTTCTTGGCGTTTAACGCTGGTCCAAG-AGCTTGCTTGGG 497
|||| ||||| || | | |||||||| | |||||| |||||||||| | | ||||||||
Sbjct 1310 AACATGAACCATC-TTTCAAGTTCTTCGTGTTTAATTCTGGTCCAAGAAAC-TGCTTGGG 1367
Query 498 AAAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGA 557
||||| ||| | |||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 1368 GAAAAATTTATCTTTCTTGCAGATGAAGACAGTAGCTGTTGAGATCATACGAAATTATGA 1427
Query 558 CATCAAGGTCGTTGAAGGGCACAAAACCGAACCTG-TTCCTTCTGTTCTTTTTCGCATGC 616
|||||||||||||||||||||||| | ||| || | ||| ||| | | ||| ||||
Sbjct 1428 CATCAAGGTCGTTGAAGGGCACAAGATCGAGCCAGCTTC-TTCCATAATCCTTCACATGA 1486
Query 617 AACATGGTCTCAAAGT 632
||||||| || |||||
Sbjct 1487 AACATGGCCTTAAAGT 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5