BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925530

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20362.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   174    2e-43
  ATCG00250.1 | Symbols: TRNE | this chloroplast gene encodes a U...   135    1e-31
  ATCG00260.1 | Symbols: TRNT.1 | tRNA-Thr | chrC:31369-31440 FOR...   128    2e-29


> AT3G20362.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 4 Blast hits to 4 
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:7103817-7104250 FORWARD LENGTH=144
Length=144

 Score =  174 bits (94),  Expect = 2e-43
 Identities = 96/97 (99%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  98   TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  48   TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC  107

Query  158  AAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAG  194
            ||||||||||| |||||||||||||||||||||||||
Sbjct  108  AAGGAGGCAGCAGGGATTCGACTTCCCCTGGGGGTAG  144


> ATCG00250.1 | Symbols: TRNE | this chloroplast gene encodes a 
UUC tRNA whose expression is regulated by SIG2. | chrC:30466-30538 
REVERSE LENGTH=73
Length=73

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 73/73 (100%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  121  GCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACT  60

Query  181  TCCCCTGGGGGTA  193
            |||||||||||||
Sbjct  61   TCCCCTGGGGGTA  73


> ATCG00260.1 | Symbols: TRNT.1 | tRNA-Thr | chrC:31369-31440 FORWARD 
LENGTH=72
Length=72

 Score =  128 bits (69),  Expect = 2e-29
 Identities = 69/69 (100%), Gaps = 0/69 (0%)
 Strand=Plus/Minus

Query  1   CCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATGGCGTTACTCTACCACTGAGT  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69  CCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATGGCGTTACTCTACCACTGAGT  10

Query  61  TAAAAGGGC  69
           |||||||||
Sbjct  9   TAAAAGGGC  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5