BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925533

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00330.1 | Symbols: RPS14 | chloroplast ribosomal protein S1...   531    2e-150
  ATCG00320.1 | Symbols: TRNFM | tRNA-Phe | chrC:36704-36777 REVE...  56.5    2e-07 


> ATCG00330.1 | Symbols: RPS14 | chloroplast ribosomal protein 
S14 | chrC:36938-37240 REVERSE LENGTH=303
Length=303

 Score =  531 bits (287),  Expect = 2e-150
 Identities = 295/299 (99%), Gaps = 0/299 (0%)
 Strand=Plus/Plus

Query  22   ATGGCAAAGAAAATTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGaaaaaaaaTAT  81
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGAAAAAAAATAT  60

Query  82   CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTTCGTCGCTAAGTGAGAAA  141
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAA  120

Query  142  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACATCTTCAT  201
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  121  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCAT  180

Query  202  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  240

Query  262  CACATCCTTCGGGAAATGGTTCAGGCTTGTTTGTTGCCAGGGGCAACAAGATCAAGCTG  320
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  241  CACATCCTTCGGGAAATGGTTCAGGCATGTTTGTTGCCAGGGGCAACAAGATCAAGCTG  299


> ATCG00320.1 | Symbols: TRNFM | tRNA-Phe | chrC:36704-36777 REVERSE 
LENGTH=74
Length=74

 Score = 56.5 bits (30),  Expect = 2e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  321  CGCGGGGTAGAGCAGTTTGGTAGCTCGCAA  350
            ||||||||||||||||||||||||||||||
Sbjct  1    CGCGGGGTAGAGCAGTTTGGTAGCTCGCAA  30



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16387286174


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5