BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925535
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00360.1 | Symbols: YCF3 | Tetratricopeptide repeat (TPR)-li... 422 1e-117
> ATCG00360.1 | Symbols: YCF3 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chrC:42584-43751 REVERSE LENGTH=381
Length=381
Score = 422 bits (228), Expect = 1e-117
Identities = 231/232 (99%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 21 ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG 60
Query 81 CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT 120
Query 141 ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC 180
Query 201 CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTAC-GTG 251
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACCGTG 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13320953485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5