BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925537

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00380.1 | Symbols: RPS4 | chloroplast ribosomal protein S4 ...  1103    0.0  


> ATCG00380.1 | Symbols: RPS4 | chloroplast ribosomal protein S4 
| chrC:45223-45828 REVERSE LENGTH=606
Length=606

 Score = 1103 bits (597),  Expect = 0.0
 Identities = 603/606 (99%), Gaps = 0/606 (0%)
 Strand=Plus/Plus

Query  21   ATGTCACGTTACCGAGGGCCTCGTCTTaaaaaaaTACGCCGTCTGGGGGCTTTACCGGGA  80
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCACGTTACCGAGGGCCTCGTTTTAAAAAAATACGCCGTCTGGGGGCTTTACCGGGA  60

Query  81   CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTaaaa  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTAAAA  120

Query  141  aaaTCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT  180

Query  201  ACAGAACGCCAATTACTTAAATATGTGCGTATCGCCGGAAAAGCCAAGGGGTCAACAGGT  260
            ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  ACAGAACACCAATTACTTAAATATGTGCGTATAGCCGGAAAAGCCAAGGGGTCAACAGGT  240

Query  261  CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG  300

Query  321  GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT  360

Query  381  CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT  440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT  420

Query  441  GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG  500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG  480

Query  501  CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT  540

Query  561  AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG  600

Query  621  ACTTAA  626
            ||||||
Sbjct  601  ACTTAA  606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31195405287


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5