BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925544
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl t... 2505 0.0
> ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl
transferase subunit beta | chrC:57075-58541 FORWARD LENGTH=1467
Length=1467
Score = 2505 bits (1356), Expect = 0.0
Identities = 1432/1467 (98%), Gaps = 12/1467 (1%)
Strand=Plus/Plus
Query 21 ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGCGAG 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGTGAG 60
Query 81 CTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCAT 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCGT 120
Query 141 TTTATATATGATATGGATAAAAACTTTTATGGTTGGGGTGA--G--C--G------TTCT 188
||||||||||||||||||||||||||||||||||||| ||| | | | ||||
Sbjct 121 TTTATATATGATATGGATAAAAACTTTTATGGTTGGGATGAGCGTTCTAGTTATTCTTCT 180
Query 189 AGTTATTCCAATAATGTTGATCTTTTAGTTAGCTCCAAGGACATTCGCAATTTCATATCG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTTATTCCAATAATGTTGATCTTTTAGTTAGCTCCAAGGACATTCGCAATTTCATATCG 240
Query 249 GATGACACCTTTTTTGTTAGGGATAGTAATAATAATAGTTATTCTATATATTTTGATaaa 308
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 241 GATGACACCTTTTTTGTTAGGGATAGTAATAAGAATAGTTATTCTATATTTTTTGATAAA 300
Query 309 aaaaaaaaaTTTTTTGAGATTGACAATGATTTTAGTGACCTAGAAAtttttttttATAGT 368
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAAAAAAAAATTTTTGAGATTGACAATGATTTTAGTGACCTAGAAAAATTTTTTTATAGT 360
Query 369 TATTGTAGTTCTAGTTATTTGAATAATAGATCTAAAGGTGACAACGATCTGCACTATGAT 428
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATTGTAGTTCTAGTTATCTAAATAATAGATCTAAAGGTGACAACGATCTGCACTATGAT 420
Query 429 CCTTACATTAAGGATACTAAATATAATTGTACTAATCACATTAATAGTTGCATTGATTCT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTACATTAAGGATACTAAATATAATTGTACTAATCACATTAATAGTTGCATTGATTCT 480
Query 489 TATTTTCGTTCTTACATCTGTATTGATAGTAACTTTTTAAGCGATAGTAATAATTCCAAT 548
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 TATTTTCGTTCTTACATCTGTATTGATAATAACTTTTTAATCGATAGTAATAATTTTAAT 540
Query 549 GAAAGTTACATTTATAATTTCATTTGTAGTGAAAGTGGAAAGATTCGTGAAAGCAAAAAT 608
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 GAAAGTTACATTTATAATTTCATTTGTAGTGAAAGCGGAAAGATTCGTGAAAGTAAAAAT 600
Query 609 TACAAGATAAGAACTAATAGGAATCGTAGTAATTTAATAAGTTCTAAGGATTTTGATATA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TACAAGATAAGAACTAATAGGAATCGTAGTAATTTAATAAGTTCTAAGGATTTCGATATA 660
Query 669 ACTCAAAACTACAATCAATTGTGGATTCAATGCGACAATTGTTATGGATTAATGTATAAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTCAAAACTACAATCAATTGTGGATTCAATGCGACAATTGTTATGGATTAATGTATAAG 720
Query 729 AAAGTCAAAATGAATGTTTGTGAACAATGTGGACATTATTTGAAAATGAGTAGTTCAGAG 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAAGTCAAAATGAATGTTTGTGAACAATGTGGACATTATTTGAAAATGAGTAGTTCAGAA 780
Query 789 AGAATCGAGCTTTCGATTGATCCGAGTACTTGGAATCCTATGGATGAAGACATGGTCTCT 848
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AGAATCGAGCTTTCGATTGATCCGGGTACTTGGAATCCTATGGATGAAGACATGGTCTCT 840
Query 849 GCGGATCCCATTAAATTTCATTCGAAGGAGGAACCTTATAAAAACCGTATTGACTCTGCT 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCGGATCCCATTAAATTTCATTCGAAGGAGGAACCTTATAAAAACCGTATTGACTCTGCG 900
Query 909 CAAAAAACTACAGGATTGACTGACGCTGTTCAAACAGGTACAGGTCAACTAAACGGTATT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAAAAAACTACAGGATTGACTGACGCTGTTCAAACAGGTACAGGTCAACTAAACGGTATT 960
Query 969 CCGGTAGCCCTTGGGGTTATGGATTTTCGGTTTATGGGGGGTAGTATGGGATCCGTAGTA 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCGGTAGCCCTTGGGGTTATGGATTTTCGGTTTATGGGGGGTAGTATGGGATCCGTAGTA 1020
Query 1029 GGCGAAAAAATAACTCGTTTGATCGAGTATGCTACCAATCAATGTTTACCTCTTATTTTA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGCGAAAAAATAACTCGTTTGATCGAGTATGCTACCAATCAATGTTTACCTCTTATTTTA 1080
Query 1089 GTGTGTTCTTCCGGAGGAGCACGAATGCAAGAAGGAAGTTTAAGTTTGATGCAAATGGCT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTGTGTTCTTCCGGAGGAGCACGAATGCAAGAAGGAAGTTTAAGTTTGATGCAAATGGCT 1140
Query 1149 AAAATTTCTTCGGTTTTATGTGATTATCAATCAAGTAAAAAGTTATTCTATATATCAATT 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAATTTCTTCGGTTTTATGTGATTATCAATCAAGTAAAAAGTTATTCTATATATCAATT 1200
Query 1209 CTTACATCTCCTACTACCGGTGGAGTGACAGCTAGTTTGGGTATGTTGGGGGATATCATT 1268
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 CTTACATCTCCTACTACCGGTGGAGTGACAGCTAGTTTTGGTATGTTGGGGGATATCATT 1260
Query 1269 ATTGCCGAACCCTATGCCTATATTGCATTTGCGGGTAAAAGAGTAATTGAACAAACATTG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTGCCGAACCCTATGCCTATATTGCATTTGCGGGTAAAAGAGTAATTGAACAAACATTG 1320
Query 1329 AAAAAAGCCGTGCCTGAAGGTTCACAAGCGGCTGAATCTTTATTACGTAAGGGCTTATTG 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAAAAAGCCGTGCCTGAAGGTTCACAAGCGGCTGAATCTTTATTACGTAAGGGCTTATTG 1380
Query 1389 GATGCAATTGTACCACGTAATCTTTTAAAAGGTGTTCTGAGCGAGTTATTTCAGCTCCAT 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GATGCAATTGTACCACGTAATCTTTTAAAAGGTGTTCTGAGCGAGTTATTTCAGCTCCAT 1440
Query 1449 GCtttttttCCGTTGAACAAAAATTAA 1475
||||||||||| ||||||| |||||||
Sbjct 1441 GCTTTTTTTCCTTTGAACACAAATTAA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5