BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925545

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00510.1 | Symbols: PSAI | photsystem I subunit I | chrC:592...   211    2e-54


> ATCG00510.1 | Symbols: PSAI | photsystem I subunit I | chrC:59247-59360 
FORWARD LENGTH=114
Length=114

 Score =  211 bits (114),  Expect = 2e-54
 Identities = 114/114 (100%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  87   ATGACAACTTTCAATAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCCTAGTCTTTCCG  146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACAACTTTCAATAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCCTAGTCTTTCCG  60

Query  147  GCAATTGCAATGGCTTCTTTATTTCTTCATATTCaaaaaaaTAAGATTTTTTAG  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCAATTGCAATGGCTTCTTTATTTCTTCATATTCAAAAAAATAAGATTTTTTAG  114



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9852478804


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5