BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925548 Length=451 Score E Sequences producing significant alignments: (Bits) Value ATCG00580.1 | Symbols: PSBE | photosystem II reaction center pr... 435 2e-121 ATCG00560.1 | Symbols: PSBL | photosystem II reaction center pr... 217 9e-56 ATCG00570.1 | Symbols: PSBF | photosystem II reaction center pr... 97.1 1e-19 > ATCG00580.1 | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=252 Length=252 Score = 435 bits (235), Expect = 2e-121 Identities = 237/238 (99%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 21 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG 60 Query 81 GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC 120 Query 141 GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA 180 Query 201 CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGACGAATTTA 258 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGATGAATTTA 238 > ATCG00560.1 | Symbols: PSBL | photosystem II reaction center protein L | chrC:63804-63920 REVERSE LENGTH=117 Length=117 Score = 217 bits (117), Expect = 9e-56 Identities = 117/117 (100%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 315 ATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTACCAGTCTCTATTGG 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTACCAGTCTCTATTGG 60 Query 375 GGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCGAATTATTTCTTCAATTAA 431 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCGAATTATTTCTTCAATTAA 117 > ATCG00570.1 | Symbols: PSBF | photosystem II reaction center protein F | chrC:63942-64061 REVERSE LENGTH=120 Length=120 Score = 97.1 bits (52), Expect = 1e-19 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 259 TGCGCTGGTTGGCTGTTCATGGACTAGCTGTACCTACCGTTTCTTTTTTGGG 310 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35 TGCGCTGGTTGGCTGTTCATGGACTAGCTGTACCTACCGTTTCTTTTTTGGG 86 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21464328823 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5