BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925548

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00580.1 | Symbols: PSBE | photosystem II reaction center pr...   435    2e-121
  ATCG00560.1 | Symbols: PSBL | photosystem II reaction center pr...   217    9e-56 
  ATCG00570.1 | Symbols: PSBF | photosystem II reaction center pr...  97.1    1e-19 


> ATCG00580.1 | Symbols: PSBE | photosystem II reaction center 
protein E | chrC:64071-64322 REVERSE LENGTH=252
Length=252

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 237/238 (99%), Gaps = 0/238 (0%)
 Strand=Plus/Plus

Query  21   ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG  60

Query  81   GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC  120

Query  141  GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA  180

Query  201  CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGACGAATTTA  258
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  181  CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGATGAATTTA  238


> ATCG00560.1 | Symbols: PSBL | photosystem II reaction center 
protein L | chrC:63804-63920 REVERSE LENGTH=117
Length=117

 Score =  217 bits (117),  Expect = 9e-56
 Identities = 117/117 (100%), Gaps = 0/117 (0%)
 Strand=Plus/Plus

Query  315  ATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTACCAGTCTCTATTGG  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTACCAGTCTCTATTGG  60

Query  375  GGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCGAATTATTTCTTCAATTAA  431
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCGAATTATTTCTTCAATTAA  117


> ATCG00570.1 | Symbols: PSBF | photosystem II reaction center 
protein F | chrC:63942-64061 REVERSE LENGTH=120
Length=120

 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 52/52 (100%), Gaps = 0/52 (0%)
 Strand=Plus/Plus

Query  259  TGCGCTGGTTGGCTGTTCATGGACTAGCTGTACCTACCGTTTCTTTTTTGGG  310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  35   TGCGCTGGTTGGCTGTTCATGGACTAGCTGTACCTACCGTTTCTTTTTTGGG  86



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21464328823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5