BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925551

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00640.1 | Symbols: RPL33 | ribosomal protein L33 | chrC:674...   350    4e-96


> ATCG00640.1 | Symbols: RPL33 | ribosomal protein L33 | chrC:67488-67688 
FORWARD LENGTH=201
Length=201

 Score =  350 bits (189),  Expect = 4e-96
 Identities = 197/201 (98%), Gaps = 0/201 (0%)
 Strand=Plus/Plus

Query  23   ATGGCCAAGGGTAAAGATGTTCGAGTAAGAATTATTTTGGAATGTACTAGTTGTGTTCGA  82
            |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct  1    ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA  60

Query  83   AATGATATTAAGAAAGAATCCGCGGGAATTTCCAGATATATTACTCaaaaaaaTCGGCAT  142
            |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   AATGATATTAAGAAAGAAGCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT  120

Query  143  AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT  180

Query  203  CACGGGGAAATCAAGAAATAG  223
            |||||||||||||||||||||
Sbjct  181  CACGGGGAAATCAAGAAATAG  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5