BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925552

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00650.1 | Symbols: RPS18 | ribosomal protein S18 | chrC:679...   532    6e-151


> ATCG00650.1 | Symbols: RPS18 | ribosomal protein S18 | chrC:67917-68222 
FORWARD LENGTH=306
Length=306

 Score =  532 bits (288),  Expect = 6e-151
 Identities = 300/306 (98%), Gaps = 0/306 (0%)
 Strand=Plus/Plus

Query  21   ATGAATAAATCTAAGCGAATTTTTACTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCC  80
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATAAATCTAAGCGACTTTTTACTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCC  60

Query  81   CCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATT  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATT  120

Query  141  AGTGAACAAGGAAAAATATTATCTAGGCGGGTGAATAGAGTGACTTTAAAACAACAACGA  200
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  AGTGAACAAGGAAAAATATTATCTAGACGGGTGAATAGAGTGACTTTAAAACAACAACGA  180

Query  201  TTAATCACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAAT  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTAATCACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAAT  240

Query  261  CATAAACAATTTGAAAGAAGTGAGTCGACCCCTAGAACTACTAGCCTTAGAACCATaaaa  320
            || |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct  241  CAGAAACAATTTGAAAGAAGTGAGTCGACTCCTAGAACTACTAGTCTTAGAACCAGAAAA  300

Query  321  aaaTAG  326
            ||||||
Sbjct  301  AAATAG  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5