BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925553

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00660.1 | Symbols: RPL20 | ribosomal protein L20 | chrC:685...   638    0.0  


> ATCG00660.1 | Symbols: RPL20 | ribosomal protein L20 | chrC:68512-68865 
REVERSE LENGTH=354
Length=354

 Score =  638 bits (345),  Expect = 0.0
 Identities = 351/354 (99%), Gaps = 0/354 (0%)
 Strand=Plus/Plus

Query  23   ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT  82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT  60

Query  83   GCATCAAGCTTTCGAGGGGCTCATTCACGACTTACACGAACTATGACTCAACAGAGAATA  142
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   GCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATA  120

Query  143  AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA  180

Query  203  TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATCAA  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAA  240

Query  263  TTCATACACAATCTGTACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA  322
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA  300

Query  323  GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATaaaaaaaTAA  376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5