BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925557
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00720.1 | Symbols: PETB | photosynthetic electron transfer ... 933 0.0
AT1G33785.1 | Symbols: | Cytochrome B6, pseudogene, similar to... 195 6e-49
> ATCG00720.1 | Symbols: PETB | photosynthetic electron transfer
B | chrC:74841-76292 FORWARD LENGTH=648
Length=648
Score = 933 bits (505), Expect = 0.0
Identities = 517/523 (99%), Gaps = 0/523 (0%)
Strand=Plus/Plus
Query 100 TTTATGATTGGTTCGAAGAACGCCTTGAGATTCAGGCGATTGCAGATGATATAACTAGTA 159
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 11 TTTATGATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGCAGATGATATAACTAGTA 70
Query 160 AATATGTTCCTCCACATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACTTGTT 219
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 AATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACTTGTT 130
Query 220 TTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTTACTG 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTTACTG 190
Query 280 AAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATCCGAT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 AAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATCCGAT 250
Query 340 CAGTTCATCGATGGTTGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTTCGTG 399
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTTCGTG 310
Query 400 TATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTC 370
Query 460 TGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTG 430
Query 520 GTTATTGGGCAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCAC 579
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GTTATTGGGCGGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCAC 490
Query 580 CTCTTGTAGAATTATTACGTTGAAGTGCTAGTGTTGGACAATC 622
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 491 CTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATC 533
> AT1G33785.1 | Symbols: | Cytochrome B6, pseudogene, similar
to Cytochrome B6. (Mouse-ear cress) {Arabidopsis thaliana};
blastp match of 61% identity and 7.1e-17 P-value to GP|2959637|gb|AAC05628.1||AF001491
cytochrome b6 {Prochlorococcus marinus
str. MIT 9303} | chr1:12255360-12256256 REVERSE LENGTH=897
Length=897
Score = 195 bits (105), Expect = 6e-49
Identities = 169/199 (85%), Gaps = 8/199 (4%)
Strand=Plus/Plus
Query 416 TTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTCTGGGTGTATTGACCGC 475
||||| ||||||| |||||||| || |||||||| ||||||| ||||||||||||||||
Sbjct 483 TTTTAGTAAACCTCACGAATTAATTTCGGTTACTGATGTGGTTTTGGGTGTATTGACCGC 542
Query 476 ATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTGGTTATTG-------GG 528
|||||||||||||||| |||||||||||| || ||||||||| |||||||| ||
Sbjct 543 ATCTTTTGGTGTAACAAGTTATTCTTTACATTAGGATCAAATAGGTTATTGCCTTATTGG 602
Query 529 -CAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCACCTCTTGTA 587
|||| |||||||||||| |||| ||| ||||||||||||||| || ||||||||||
Sbjct 603 GCAGTAAAAATTGTAACATATGTATTTGATGCTATTCCGGTAATAATATTACCTCTTGTA 662
Query 588 GAATTATTACGTTGAAGTG 606
||||||||||| ||||||
Sbjct 663 GAATTATTACGCAGAAGTG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5