BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925563

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00780.1 | Symbols: RPL14 | ribosomal protein L14 | chrC:806...   665    0.0  


> ATCG00780.1 | Symbols: RPL14 | ribosomal protein L14 | chrC:80696-81064 
REVERSE LENGTH=369
Length=369

 Score =  665 bits (360),  Expect = 0.0
 Identities = 366/369 (99%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  21   ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATG  80
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTAGAGAATTGATG  60

Query  81   TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT  120

Query  141  GTTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT  200
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT  180

Query  201  GTAATTGTACGTACTTGTAAAGAACTCAAACGTAATAATGGGACGATAATACGATATGAT  260
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  GTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAATGGGACGATAATACGATATGAT  240

Query  261  GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG  300

Query  321  GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG  360

Query  381  GTATTATAA  389
            |||||||||
Sbjct  361  GTATTATAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5