BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925574
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01260.1 | Symbols: TRNL.4 | tRNA-Leu | chrC:144293-144373 F... 150 5e-36
ATCG00880.1 | Symbols: TRNL.2 | tRNA-Leu | chrC:94276-94356 REV... 150 5e-36
> ATCG01260.1 | Symbols: TRNL.4 | tRNA-Leu | chrC:144293-144373
FORWARD LENGTH=81
Length=81
Score = 150 bits (81), Expect = 5e-36
Identities = 81/81 (100%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 7 GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG 60
Query 67 GTTCGAGTCCTCTTCAAGGCA 87
|||||||||||||||||||||
Sbjct 61 GTTCGAGTCCTCTTCAAGGCA 81
> ATCG00880.1 | Symbols: TRNL.2 | tRNA-Leu | chrC:94276-94356 REVERSE
LENGTH=81
Length=81
Score = 150 bits (81), Expect = 5e-36
Identities = 81/81 (100%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 7 GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG 60
Query 67 GTTCGAGTCCTCTTCAAGGCA 87
|||||||||||||||||||||
Sbjct 61 GTTCGAGTCCTCTTCAAGGCA 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11561582270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5