BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925580
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62010.1 | Symbols: | Mitochondrial transcription terminati... 734 0.0
AT1G62120.1 | Symbols: | Mitochondrial transcription terminati... 708 0.0
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 411 1e-113
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 388 5e-107
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 344 1e-93
AT1G61980.1 | Symbols: | Mitochondrial transcription terminati... 340 1e-92
> AT1G62010.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22915745-22917330 FORWARD
LENGTH=1586
Length=1586
Score = 734 bits (397), Expect = 0.0
Identities = 480/521 (92%), Gaps = 2/521 (0%)
Strand=Plus/Plus
Query 686 TGTAGGTTTCACTGTGGATGATGTATGGGCAATGGTCAAGAAGTGGCCACGCTCTCTGAC 745
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 891 TGTAGGTTTCTCTGTTGATGATGTATGGGCAATGTTCAAGAAGTGGCCACGCTCTTTGAC 950
Query 746 ACACTCGGAGAAGAAGGTAGCCAACTCCATTGAAACATTTCTTGGTCTAGGATTCAGCAG 805
||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 951 ACATTCGGAGAAGAAGGTAGCCAACTCTATAGAAACATTTCTAGGTCTAGGATTCAGCAG 1010
Query 806 AGATGAGTTTTTGATGATGGTCAAGCGGTTTCCTCAATGCATTGGATTTTCGACAGAGTT 865
||||| |||| |||||||| ||||||||||||||| || ||||||| ||| ||||||
Sbjct 1011 AGATGTGTTTATGATGATGTTCAAGCGGTTTCCTCCGTGTATTGGATATTCTACAGAGGC 1070
Query 866 AGTGAAGAAGAAGACTGAGTATCTGGTGAAGGAGATGAATTGGCCACTAAAGGCTGTGGC 925
||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||
Sbjct 1071 GGTGAAGAAGAAGACTGAGTTTTTGGTCAAGGAGATGAATTGGCCAGTAAAGGCTGTGGC 1130
Query 926 TTCAATCCCTCAAGTAGTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGT 985
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTCAATCCCTCAGGTACTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGT 1190
Query 986 AATCAAAGTTCTCATCTCAAAAGGATTGCTCGAAAGTGAACTCCCTCCAATATCGTCTGT 1045
|||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1191 TATCAAAGTTCTCATGTCAAAAGGATTGCTTGAAAGTGAACTCCCTCCAATGTCTTCTGT 1250
Query 1046 TTTGACAAGTACTAGTGAGAAGTTTTTAAATT-GTTATGTTAGGAAACATGATGACAAGC 1104
||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||
Sbjct 1251 TTTGACAAGTACTAGTGAGTCGTTTTTAAATTTGT-ATGTTAGCAAACATGATGACAAGC 1309
Query 1105 AGCTTGTGGCTGAGTTGATGGTTATCTTCACTGGAGATCGTGTTTCACTCACCGATCAGA 1164
|||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 1310 AGCTTGTGGCTGAGCTGATGGCAATCTTCACCGGAAATCGTGTTTCACTCACCGATCAGA 1369
Query 1165 AGACACGCCTAGAACAATGAGCAACGTTAAGGATTGTTTTT 1205
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AGGCACGCCTAGAACAATGAGCAACGTTAAGGATTGTTTTT 1410
Score = 665 bits (360), Expect = 0.0
Identities = 544/626 (87%), Gaps = 39/626 (6%)
Strand=Plus/Plus
Query 84 TTGCAAAATGGATC-TTCTTTTTCCAATTCGTTCTCTTCTGCTAGTGCTGCTGATGTGAG 142
|||||||||| ||| ||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 211 TTGCAAAATGAATCTTTC-TCTTCGTATTCGTTCTCTTCTGCTAGTGCTGCTGATGTGAG 269
Query 143 CCCTAAAGATGGTGGAAAAGGGGAGACCTTTAAAGCTTCGTCATTCCGTGATTCACTGCG 202
||| | |||||||||||||||||| | ||||| |||| ||||||||||||
Sbjct 270 CCC---------T---AAAGGGGAGACCTTTAAATCCTCGTCCTTCCTTGATTCACTGCG 317
Query 203 TTTAG-T-C---A---A-T-------G-----CTGATTCGGTTCTGGATCTTCTTAGAAG 241
||||| | | | | | | ||||||| |||||||||||||| |||||
Sbjct 318 TTTAGCTACAAAACTCACTGACAAGGGAAATTCTGATTCCGTTCTGGATCTTCTCAGAAG 377
Query 242 TTATGGGTTCACAGATTCTCAGATCTCCAGCATCATTAGGAGTGATCCACA-AGTGCTTA 300
|||||||||||| ||||||||||||||||||||||| ||||||||| || | ||||||||
Sbjct 378 TTATGGGTTCACTGATTCTCAGATCTCCAGCATCATCAGGAGTGATTCA-AGAGTGCTTA 436
Query 301 TAGCCAAT-ACTGCGACATCCCTTGGTTCAAAGCTTGAGTTTTTGCAGGCCAGAGGAGCG 359
||| |||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 437 TAGACAATGA-TGCGACATCCCTTGGTTCAAAGCTTCAGTTTTTGCAGTCCAGAGGAGCT 495
Query 360 TCAAGCTCTGAGCTCACTGAGATTGTTTCTACAGTTCCTAAAATCTTGGGGAAGAGAGAG 419
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 496 TCAAGCTCTGAGCTCACTGAGGTTGTTTCCACAGTTCCTAAAATCTTGGGGAAGAGAGAG 555
Query 420 GGCCAATCTATCAGCAGATACTATGATTTCGTCAAAGTCATTATAGAAGCAGATAAGAGT 479
||| ||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 556 GGCAAATCTCTCAGCAGATATTATGATTTCATCAAAGTCATTATAGAAGCTGATAAGAGT 615
Query 480 TCCAAGTATGTAAAGTTATCTCATTCTTTATCACAGGGTAACAAGATCAGAAATGTTTTG 539
|||||||||| |||| ||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 616 TCCAAGTATGAAAAGATATCTCATTCTTTGGCACAGGGTAACAAGATCAGAAATATCTTG 675
Query 540 GTTTTGAGAGATTTGGGTGTGCCTCAAAAGCGGTTGTTACCTTTGCTCATCTCCAAAGCG 599
||||||||||| | || ||||||||||||||||| | | |||||||||||||||| ||
Sbjct 676 GTTTTGAGAGAACTAGGCGTGCCTCAAAAGCGGTTACTGCTTTTGCTCATCTCCAAATCG 735
Query 600 CAGCCCGTGTGTGGAAAAGAAAAATTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGT 659
||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 736 CAGCCTGTTTGTGGAAAAGAAAAGTTTGATGCATCACTCAAGAAGGTAGTTGAGATGGGT 795
Query 660 TTTGATCCAACCACCTCAACGTTTGT 685
||||||||||||||||||||||||||
Sbjct 796 TTTGATCCAACCACCTCAACGTTTGT 821
> AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960191-22961779 REVERSE
LENGTH=1589
Length=1589
Score = 708 bits (383), Expect = 0.0
Identities = 471/513 (92%), Gaps = 7/513 (1%)
Strand=Plus/Plus
Query 697 CTGTGGATGATGTATGGGCAATGGTCAAGAAGTGGCCACGC-TCTCTGACACACTCGGAG 755
||||||| ||||||||||||||| |||||||||||||| | | ||||||| | || |||
Sbjct 967 CTGTGGACGATGTATGGGCAATGTTCAAGAAGTGGCCAAACAT-TCTGACAAAGTCTGAG 1025
Query 756 AAGAAGGTAGCCAACTCCATTGAAACATTTCTTGGTCTAGGATTCAGCAGAGATGAGTTT 815
|||||| ||| |||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 1026 AAGAAGATAGAGAACTCCGTTGAAACATTTCTAGGCCTAGGATTCAGCAGAGATGAGTTT 1085
Query 816 TTGATGATGGTCAAGCGGTTTCCTCAATGCATTGGATTTTCGACAGAGTTAG-TGAAGAA 874
||||||||||||||||| || ||||| |||||||||| ||| |||||||| | ||||||
Sbjct 1086 TTGATGATGGTCAAGCGATTCCCTCAGTGCATTGGATATTCTACAGAGTT-GATGAAGAC 1144
Query 875 GAAGACTGAGTATCTGGTGAAGGAGATGAATTGGCCACTAAAGGCTGTGGCTTCAATCCC 934
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GAAGACTGAGTTTCTGGTGACGGAGATGAATTGGCCACTAAAGGCTGTGGCTTCAATCCC 1204
Query 935 TCAAGTAGTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGT 994
||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1205 TCAGGTACTCGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTTATCAAAGT 1264
Query 995 TCTCATCTCAAAAGGATTGCTCGAAAGTGAACTCCCTCCAATATCGTCTGTTTTGACAAG 1054
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1265 TCTCATCTCAAAAGGATTGCTCGAAAGTGAACTCCCTCCAATATCCTCTGTTTTGACAAG 1324
Query 1055 TACTAGTGAGAAGTTTTTAAAT-TGTTATGTTAGGAAACATGATGACAAGCAGCTTGTGG 1113
||| |||||| ||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1325 TACCAGTGAGGTGTTTTTATATATGT-ATGTTAGGAAACATGATGACAAGCAGCTTGTGG 1383
Query 1114 CTGAGTTGATGGTTATCTTCACTGGAGATCGTGTTTCACTCACCGATCAGAAGACACGCC 1173
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1384 CTGAGTTGATGGCTATCTTCACCGGAGATCGTGTTTCACTCACCGATCAGAAGACACGCC 1443
Query 1174 TAGAACAATGAGCAACGTTAAGGATTG-TTTTT 1205
||||||||||||||| || |||||| | |||||
Sbjct 1444 TAGAACAATGAGCAAAGTCAAGGATGGATTTTT 1476
Score = 385 bits (208), Expect = 6e-106
Identities = 407/497 (82%), Gaps = 38/497 (8%)
Strand=Plus/Plus
Query 214 CTGATTCGGTTCTGGA-TCTTCTT-AGAAGTTATGGGTTCACAGATTCTCAGATCTCCAG 271
||||||| ||||| || |||| || |||||| |||||||||| ||||||||||||||||
Sbjct 403 CTGATTCTGTTCT-GAGTCTT-TTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCCAA 460
Query 272 CATCATTAGGAGTGATCCACAAG--TGCTTATAGCC-A-ATACTGCGACATCCCTTGGTT 327
||||||||||| | ||| |||| ||||||| || | || ||| || |||||||| |
Sbjct 461 CATCATTAGGACT-TTCC-CAAGATTGCTTAT--CCTAGATGCTGAGAAATCCCTTGCTC 516
Query 328 CAAAGCTTGAGTTTTTGCAGGCCAGAGGAGCGTCAAGCTCTGAGCTCACTGAGATTGTTT 387
| |||||| ||||| ||||| ||| ||| || ||||||||||||||||| |||| |||||
Sbjct 517 CCAAGCTTCAGTTTCTGCAGTCCATAGGTGCTTCAAGCTCTGAGCTCACCGAGACTGTTT 576
Query 388 CTACAGTTCCTAAAATCTTGGGGAAGAGAGAGGGCCAATCTATCAGCAGATACTATGATT 447
|| ||||||| ||||| |||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 577 CTGCAGTTCCGAAAATATTGGGGAAGAGAAAGGGCAAATCTCTCAGCAGATACTATGATT 636
Query 448 TCGTCAAAGTCATTATAGAAGCAGATAAGAGTTCCAAGT-ATGTAAAGTTATCTCATTCT 506
|||||||||||||||||||||| |||||||||||||||| | | |||||||| |||||||
Sbjct 637 TCGTCAAAGTCATTATAGAAGCGGATAAGAGTTCCAAGTTA-GAAAAGTTATGTCATTCT 695
Query 507 TTATCACAGGGTA--A--CA--AGA------TCAGAAATGTT-TTGGTTTTGAGAGATTT 553
|| || |||||| | || ||| |||||||| || ||||| |||||||| |
Sbjct 696 TTGCCAGAGGGTAGTAAGCAGGAGAACAAAATCAGAAAT-TTATTGGTGTTGAGAGAAAT 754
Query 554 GGGTGTGCCTCAAAAGCGGTTGTTAC-CT--TTGCTCATCTCCAAAGC-GCAGCCCGTGT 609
|||||||||||| | | | |||||| || ||||| || ||| | || | || || |
Sbjct 755 GGGTGTGCCTCAGA-G-G-TTGTTATTCTCATTGCTTATATCCGATGCCGGAGAT-GTTT 810
Query 610 GTGGAAAAGAAAAATTTGATGCATCACTCAAGAAGG-TCGTTGAGATGGGTTTTGATCCA 668
|||| |||||||||||| | | |||||||||||||| | |||||||| ||||||||||||
Sbjct 811 GTGGTAAAGAAAAATTTAAAGAATCACTCAAGAAGGCT-GTTGAGATTGGTTTTGATCCA 869
Query 669 ACCACCTCAACGTTTGT 685
|||||| |||| |||||
Sbjct 870 ACCACCGCAACTTTTGT 886
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 411 bits (222), Expect = 1e-113
Identities = 409/496 (82%), Gaps = 26/496 (5%)
Strand=Plus/Plus
Query 209 CAATGCTGATTCGGTTCTGGA-TCTTCTT-AGAAGTTATGGGTTCACAGATTCTCAGATC 266
|||| ||||||| ||||| || || | || |||||| |||||||||| ||||||||||||
Sbjct 255 CAATCCTGATTCTGTTCT-GAGTC-TATTGAGAAGTCATGGGTTCACTGATTCTCAGATC 312
Query 267 TCCAGCATCATTA-GGAGTGATCCACAAGTGCTTA-TAGCCAATACTGCGACATCCCTTG 324
|| |||||||||| ||| | |||||||| ||| || |||| || ||| || ||| |||
Sbjct 313 TCAAGCATCATTACGGA-TTATCCACAATTGC-TAGTAGCTGATGCTGAGAAATCAATTG 370
Query 325 GTTCAAAGCTTGAGTTTTTGCAGGCCAGAGGAGCGTCAAGCTCTGAGCTCACTGAGATTG 384
|| | |||||| ||||| ||||| |||||||||| ||||| |||||||||||| | ||||
Sbjct 371 GTCCCAAGCTTCAGTTTCTGCAGTCCAGAGGAGCTTCAAGGTCTGAGCTCACTCATATTG 430
Query 385 TTTCTACAGTTCCTAAAATCTTGGGGAAGAGAGAGGG-CCAATCTATCAGCAGATACTAT 443
| |||||||||||| |||||||||||||||||| ||| | || ||||||||| |||||||
Sbjct 431 TATCTACAGTTCCTGAAATCTTGGGGAAGAGAG-GGGACAAAACTATCAGCATATACTAT 489
Query 444 GATTTCGTCAAAGTCATTATAGAAGCAGATAAGAGTTCCAAGTAT-GTAAAGTTATCTCA 502
||||| || |||| ||||||||||| |||||||||||||||| | | |||||||| |||
Sbjct 490 GATTTTGTTAAAGAGATTATAGAAGCGGATAAGAGTTCCAAGT-TCGAAAAGTTATGTCA 548
Query 503 TTCTTTATCACA-GG--GTAA-CA--AG------ATCAGAAATGTTTTGGTTTTGAGAGA 550
|||||| || | || |||| || || ||||||||||||||||||||||||||
Sbjct 549 TTCTTTGCCAGAGGGTAGTAAGCAGGAGAACAAAATCAGAAATGTTTTGGTTTTGAGAGA 608
Query 551 TTTGGGTGTGCCTCAAAAGCGGTTGTTACCTTTGCTCATCTCCAAAGC-GCAGCCCGTGT 609
|||||||| ||||||| | |||||| || ||||| || | | | | || || || |
Sbjct 609 ATTGGGTGTTCCTCAAAGGTTGTTGTTCCCATTGCTTATAT-CTGATCACCAACCTGTCT 667
Query 610 GTGGAAAAGAAAAATTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGATCCAA 669
||||||||||||| ||||| | |||||||||||| || ||||||||||||||||||||||
Sbjct 668 GTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAAGTTGTTGAGATGGGTTTTGATCCAA 727
Query 670 CCACCTCAACGTTTGT 685
||||||||| ||||||
Sbjct 728 CCACCTCAAAGTTTGT 743
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 388 bits (210), Expect = 5e-107
Identities = 409/500 (82%), Gaps = 34/500 (7%)
Strand=Plus/Plus
Query 209 CAATGCTGATTCGGTTCTGGA-TCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCT 267
|||| |||||| ||||| || |||| |||||||||||||||||||| ||||||||||||
Sbjct 475 CAATCCTGATTTAGTTCT-GAGTCTTTTTAGAAGTTATGGGTTCACAAATTCTCAGATCT 533
Query 268 CCAGCATCATTA-GGAGTGATCCACA-AGTGCTTATAGCCA-ATACTGCGACATCCCTTG 324
|||||||||||| ||| | |||| | | ||||| || | || ||| || ||| ||||
Sbjct 534 CCAGCATCATTACGGA-TTATCC-TAGATTGCTTCTA-ATAGATGCTGAGAAATCACTTG 590
Query 325 GT-TCAAAGCTTGAGTTTTTGCAGGCCAGAGGAGCGTCAAGCTCTGAGCTCACTGAGATT 383
| || |||||| |||||||| || | |||||||| |||||| ||||||||||| |||||
Sbjct 591 ATATC-AAGCTTCAGTTTTTGGAGTCTAGAGGAGCTTCAAGCCCTGAGCTCACTCAGATT 649
Query 384 GTTTCTACAGTTCCTAAAATCTTGGGGAA-GAGAGAGGGCCAA-TCTATCA-GCAGATAC 440
|||||||||||||||||||| || ||||| || |||||| || ||| | | ||||||||
Sbjct 650 GTTTCTACAGTTCCTAAAATATT-GGGAATGAAAGAGGG-AAAGTCTCT-AGGCAGATAC 706
Query 441 TATGATTTCGTCAAAGTCATTATAGAAGCAGATAAGAGTTCCAAGTATGTAAAGTTA-TC 499
|||||||||||||||| ||||||||||||||||||||||||||||| | ||| || |
Sbjct 707 TATGATTTCGTCAAAGAGATTATAGAAGCAGATAAGAGTTCCAAGTACG-AAACTTTGTG 765
Query 500 TCATTCTTT---AT---C-A-----CAGGGTAACAAGATCAGAAATGTTTTGGTT-TTGA 546
||| |||| | | | |||||||| || ||||||||||||| |||| || |
Sbjct 766 TCAACCTTTGCCAGAGGCTAATAGGCAGGGTAATAAAATCAGAAATGTTTCGGTTCTT-A 824
Query 547 GAGATTTGGGTGTGCCTCAAAAGCGGTTGTTA-CCTTTGCTCATCTCCAAAGCGCAGCCC 605
|||| |||||||||||||| ||| ||| || |||| ||||||||| | || || ||
Sbjct 825 GAGACTTGGGTGTGCCTCAGAAGTTGTTATTCTCCTT-GCTCATCTCTGATGCCCAACCT 883
Query 606 GTGTGTGGAAAAGAAAAATTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGAT 665
|| |||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 884 GTTTGTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAGGTTGTTGAGATGGGTTTTGAT 943
Query 666 CCAACCACCTCAACGTTTGT 685
||||||||||||| ||||||
Sbjct 944 CCAACCACCTCAAAGTTTGT 963
Score = 274 bits (148), Expect = 1e-72
Identities = 333/418 (80%), Gaps = 30/418 (7%)
Strand=Plus/Plus
Query 768 AACTCCATTGAAACATTTCTTGGTCTAGGATTCAGCAGAGATGAGTTTTTGATGATGGTC 827
||||||||||||| |||||| || ||||| ||||||||||||||||| | | |||||
Sbjct 1220 AACTCCATTGAAATATTTCTAGGCCTAGGCTTCAGCAGAGATGAGTTCATAACAATGGTT 1279
Query 828 AAGCGGTTTCCTCAATG-CATTGGA-TTT-TC-GACAGAGTTAGTGAAGAAGAAGACTGA 883
||||| |||||||| || | || | ||| || | ||||| ||||||||||||| |||
Sbjct 1280 AAGCGCTTTCCTCAGTGTC-TT--ATTTTATCTG-CAGAGACGGTGAAGAAGAAGATTGA 1335
Query 884 GTATCTGGTGAAGGAGATGAATTGGCCACTAAAGGCTGTGGCTTC-AATCCCTCA-AGTA 941
|| | |||||||| |||||||||||||||| |||| ||||| ||| ||| ||| | |||
Sbjct 1336 GTTTGTGGTGAAGAAGATGAATTGGCCACTGAAGGATGTGGTTTCAAAT-CCT-ACGGTA 1393
Query 942 GTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTCTCATC 1001
||||||||| ||| ||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1394 CTTGGATACAACCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTTATTGAAGCTCTCATG 1453
Query 1002 TCAAAAGGA-TTGCTCG-A-A-A--G----TGAACTCCCTCCAATATCGTCTGTTTTGAC 1051
|||||| || || |||| | | | | ||||||||||||||| ||||||||||||
Sbjct 1454 TCAAAAAGACTT-CTCGGAGACACAGGAAGTGAACTCCCTCCAATGTCGTCTGTTTTGGT 1512
Query 1052 AAGTACT-AGTGAGAAGTTTTTAAATTGTTATGTTAGGAAACATGATGACAAGCAGCTTG 1110
| ||||| | |||| ||| ||||| | ||||| ||||| |||| ||||||| |||| |
Sbjct 1513 ATGTACTGA-TGAGTTGTTCTTAAAAAGGTATGTGAGGAACCATGGTGACAAGGAGCTGG 1571
Query 1111 TGGCT-GAGTTGATGGTTATCTT-CACTGGAGATCGTGTTTCACTCACCGATCAGAAG 1166
|| || ||||||||| ||| || ||| ||| |||||| ||| ||| |||||||||
Sbjct 1572 TG-CTTGAGTTGATGACTAT-TTACACCAGAGGTCGTGTATCA-TCATAGATCAGAAG 1626
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 344 bits (186), Expect = 1e-93
Identities = 403/502 (80%), Gaps = 38/502 (8%)
Strand=Plus/Plus
Query 209 CAATGCTGATTCGGTTCTGGATCTTCTTAGAAGTTATGGGTTCACAGATTCTCAGATCTC 268
|||| ||||| | |||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 439 CAATCCTGATACAGTTCTGAATCTTCTTAGAAGTCATGAGTTCACAGATTCTCAGATCTC 498
Query 269 CAGCATCA-TTAGGAGTGATCC-ACAAGTGCTTATAGCCA-ATACTGCGACA-TCCCTTG 324
|||||||| || ||| | |||| || | ||||| ||| || || ||| | | || ||||
Sbjct 499 CAGCATCATTTCGGA-TTATCCAAC-ATTGCTTGTAG-CAGATGCTG-AAAATTCACTTG 554
Query 325 GTTCAAAGCTTGAGTTTTTGCAGGCCAGAGGAGCGTCAAGCTCTGAGCTCACTGAGATTG 384
|| | |||||| ||| ||||| | |||||||| |||||||||||||||||||||||||
Sbjct 555 GTCCCAAGCTTCTGTTGATGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTG 614
Query 385 TTTCTACAGTTCCTAAAATCTTGGGGAA-GAGAGAGGGCCAATC-TATCAGCAGATACTA 442
|||||| ||||||||||||||| || || || || ||| ||| |||| ||||||||||
Sbjct 615 TTTCTAAAGTTCCTAAAATCTTAGG-AATGAAAG-GGGACAAAAGTATCGGCAGATACTA 672
Query 443 TGATTTCGTCAAAGTCATTATAGAAGCAGATAAGAGTTCCAAGTAT-GTAAAGTTATCTC 501
|||| ||||||||| ||||||||||| |||||||| ||||||| | | |||| | | ||
Sbjct 673 TGATATCGTCAAAGAGATTATAGAAGCGGATAAGAGCTCCAAGT-TCGAAAAGCTGTGTC 731
Query 502 ATTCTTTATCACAGGGTA--A--CA--AGA-T-----CAGAAATGTTTTGGTTTTGAGAG 549
||||||| | |||||| | || ||| | ||| ||||| |||||||||||||
Sbjct 732 ATTCTTTGCCTGAGGGTAGTAAGCAGGAGAATAAAATCAGGAATGTATTGGTTTTGAGAG 791
Query 550 ATTTGGGTGTGCCTCAAAAGCGGTTGTTAC-CT--TTGCTCATCTCCAAAGCGC-A-GCC 604
|||||||||||||||||| | | |||||| || |||||| |||| || | | | | |
Sbjct 792 ATTTGGGTGTGCCTCAAA-G-G-TTGTTATTCTCATTGCTCTTCTCTAAT-CACCATGTC 847
Query 605 CGTGTGTGGAAAAGAAAAATTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGA 664
| |||||||||||||| ||||| | ||||||||| ||||| |||| ||||||||||||
Sbjct 848 TGC-TGTGGAAAAGAAAAGTTTGAAGAATCACTCAACAAGGTTGTTGGGATGGGTTTTGA 906
Query 665 TCCAACCACCTC-AACGTTTGT 685
||| ||||| || || ||||||
Sbjct 907 TCCCACCAC-TCCAAAGTTTGT 927
Score = 303 bits (164), Expect = 2e-81
Identities = 308/375 (82%), Gaps = 19/375 (5%)
Strand=Plus/Plus
Query 768 AACTCCATTGAAACATTTCTTGGTC-TAGGATTCAGCAGAGATGAGTTTTTGATGATGGT 826
|||||||| ||||||||| | || | ||||||||||||||||||||||| | ||||||||
Sbjct 1184 AACTCCATGGAAACATTTATAGG-CTTAGGATTCAGCAGAGATGAGTTTGTCATGATGGT 1242
Query 827 CAAGCGGTTTCCTCAATGCATTGGATTTTC-GACAGAGTTAGTGAAGAAGAAGACTGAGT 885
|||| | ||||||| |||||||||| ||| | ||||| | |||||||||||||||||||
Sbjct 1243 CAAGTGCCTTCCTCAGTGCATTGGATATTCTG-CAGAGATGGTGAAGAAGAAGACTGAGT 1301
Query 886 ATCTGGTGAAGGAGATGAATTGGCCACTAAAGGCT-GTGGCTTCAATCCCTCAAGTAGTT 944
| |||||||| |||||||||||||||| |||| | | ||| ||||||| ||| ||
Sbjct 1302 TTGTGGTGAAGAAGATGAATTGGCCACTTAAGG-TCATTACTTTGTTCCCTCAGGTACTT 1360
Query 945 GGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTCTCATCTCA 1004
||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1361 GGATATAGCATGGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGCTCTCATGTCC 1420
Query 1005 AAAGGATTGCTCGAAAGTGAACTCCCTCCAATATCGTCTGTTTTGACAAGTACT-AGTGA 1063
||||||||||| | ||| |||||||||||||| ||||||||||| || |||| | | |
Sbjct 1421 AAAGGATTGCTTGGAAGCGAACTCCCTCCAATGGCGTCTGTTTTGGCATGTACCGA-TCA 1479
Query 1064 GAAGTTTTTAAATTGTTATGT--TAGGAAACATGATGACAAGCAGCTTGTGGCT-GAGTT 1120
|| || ||||| | ||||| | | | |||||||| || |||| ||| || |||||
Sbjct 1480 GACCTTCTTAAAAAGGTATGTGGTTG-AG-CATGATGA-AA--AGCTGGTG-CTTGAGTT 1533
Query 1121 GATGGT-TATCTTCA 1134
|||| | ||||||||
Sbjct 1534 GATG-TCTATCTTCA 1547
> AT1G61980.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22908045-22909588 FORWARD
LENGTH=1544
Length=1544
Score = 340 bits (184), Expect = 1e-92
Identities = 396/493 (80%), Gaps = 36/493 (7%)
Strand=Plus/Plus
Query 214 CTGATTCGGTTCTGGATCTTCTT-AGAAGTTATGGGTTCACAGATTCTCAGATCTCCAGC 272
|||| || |||||| ||||| || |||||| |||||||||| |||||||||||||||| |
Sbjct 368 CTGACTCTGTTCTGAATCTT-TTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCCACC 426
Query 273 ATCATTA-GGAGTGATCCACAAGTGCTTATAGCCAATACTGCGACATCCCTTGGTTCAAA 331
||| ||| ||| | |||||||| ||||| |||| || ||| || ||| |||| | | ||
Sbjct 427 ATCGTTACGGA-TTATCCACAATTGCTTGTAGCTGATGCTGAGAAATCACTTGCTCCCAA 485
Query 332 GCTTGAGTTTTTGCAGGCCAGAGGAGCGTCAAGCTCTGAGCTCACTGAGATTGTTTCTAC 391
|||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 486 GCTTCAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTAC 545
Query 392 AGTTCCTAAAATCTTGGGGAAGAGAGAGGGC-CAAT-CTATCAGCAG-ATACTATGATTT 448
|||||||||||||||||| || ||||||| | ||| |||||||| | || |||||||||
Sbjct 546 AGTTCCTAAAATCTTGGG-AA-AGAGAGGCCACAAAACTATCAGC-GTATTCTATGATTT 602
Query 449 CGTCAAAGTCA-TTATAGAAGCAGATAAGAGTTCCAAGTATGTAAAGTTATCTCATTCTT 507
| |||||| | || || | | |||||||||||||| | ||||| || ||| |||
Sbjct 603 CATCAAAGAAACTT-TACTTG-A--TAAGAGTTCCAAGTCCGAAAAGTCATGTCAACCTT 658
Query 508 TATC-ACAGGGTAA-C---A-A----GATCAGAAATGTT-T-TGGTTTTGAGAGATTTGG 555
| || ||||||||| | | | |||||||||| || | || |||||||||| ||||
Sbjct 659 T-TCCACAGGGTAATCTGGAGAACAAGATCAGAAAT-TTATCTG-TTTTGAGAGAATTGG 715
Query 556 GTG-TGCCTCAAAAGCGGTTGTTACCTTTGCTCATCTCCAAAG-CGCAGCCCGTGTGT-G 612
| | ||||||| ||| ||| || || ||||||||||| | || | || || | | |
Sbjct 716 G-GATGCCTCACAAGTTGTTATTCCCCTTGCTCATCTCTTGTGACGTA-CCTGTCT-TCG 772
Query 613 GAAAAGAAAAATTTGATGCATCACTCAAGAAGGTCGTTGAGATGGGTTTTGATCCAACCA 672
| |||||||||||||| | ||| |||||||| || ||||||||||||||||||||| |||
Sbjct 773 GTAAAGAAAAATTTGAAGAATCCCTCAAGAAAGTTGTTGAGATGGGTTTTGATCCATCCA 832
Query 673 CCTCAACGTTTGT 685
|||||| ||||||
Sbjct 833 CCTCAAAGTTTGT 845
Score = 322 bits (174), Expect = 5e-87
Identities = 364/454 (80%), Gaps = 20/454 (4%)
Strand=Plus/Plus
Query 688 TAGG-TTTCACTGTGG-ATGATGTATGGGCAATGGTCAAGAAGTGGCCACGCTCTCTGAC 745
|||| ||| | ||||| || |||||||| || || |||||| ||||||| || ||||||
Sbjct 917 TAGGCTTTGA-TGTGGAAT-ATGTATGGACAGTGTTCAAGAGGTGGCCAAACTTTCTGAC 974
Query 746 ACACTCGGAGAAGAAGGTAGCCAACTCCATTGAAACATTTCTTGGTCTAGGATTCAGCAG 805
|||||||||||||||| || ||| |||||||||||||||| || ||||| ||||||||
Sbjct 975 ACACTCGGAGAAGAAGATATTGAACACCATTGAAACATTTCTAGGCCTAGGGTTCAGCAG 1034
Query 806 AGATGAGTTTTTG-ATGATGGTCAAGCGGTTTCCTCAATGCATTGGATT-TTCGACAGAG 863
||||||| ||| | || | | ||||| |||||||| |||||||||| | || | |||
Sbjct 1035 AGATGAG-TTTAGCGTGTTAATTAAGCGCTTTCCTCAGGGCATTGGATTATCCG-CGGAG 1092
Query 864 TTAGTGAAGAAGAAGACTGAGTATCTGGTGAAGGAGATGAATTGGCCACTAAAGGCTGTG 923
| || || ||||||||||||| | |||| ||| ||||||||||||||||||||||| |
Sbjct 1093 ATGGTTAAAAAGAAGACTGAGTTTTTGGTAAAGAAGATGAATTGGCCACTAAAGGCTCTT 1152
Query 924 GCTTCAATCCCT-CAAGTAG-TTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTA 981
| ||||| |||| | || | ||||||||||||||||||||||||||||||||||| |||
Sbjct 1153 GTTTCAAACCCTGC-GGT-GCTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGGGTA 1210
Query 982 ATGTAAT-CAAAGTTCTCATCTCAAAAGGATTGCTCGAAAGTGAACTCCCTCCAATATCG 1040
| ||| | ||| | ||||||||| || |||||| ||| ||||||||||||| | ||||||
Sbjct 1211 ACGTAGTTCAA-GCTCTCATCTCCAAGGGATTGATCGGAAGTGAACTCCCTTCGATATCG 1269
Query 1041 TC-TGTTTT-GACAAGTACT-AGTGAGAAGTTTTTAAATTGTTATGTTAGGAAACATGAT 1097
| ||| || | | |||| | | || ||| ||||| | ||||| | || |||||
Sbjct 1270 -CGTGTCTTCGT-ATGTACCGA-TCAGGTGTTCTTAAACAGGTATGTGAAGAGGCATGAG 1326
Query 1098 GACAAGCAGCTTGTGGCTGAGTTGATGGTTATCT 1131
||||||||||| | | |||||||||||| |||||
Sbjct 1327 GACAAGCAGCTGGAGACTGAGTTGATGGCTATCT 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5