BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925581

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally...   217    4e-56


> AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally 
active 4 | chr1:24236258-24240705 FORWARD LENGTH=1341
Length=1341

 Score =  217 bits (117),  Expect = 4e-56
 Identities = 145/158 (92%), Gaps = 3/158 (2%)
 Strand=Plus/Plus

Query  5    CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCAGCTGCCGGATTATTCCCTCCTCT  64
            |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct  56   CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT  115

Query  65   CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTGTTCGCTCAGGGT  121
            ||||||||||||||||||||||||||||||||||   |||||||||||||| |||||| |
Sbjct  116  CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT  175

Query  122  TCTCCCCCTTAGACCATCCTTCTTCGGTAACTCCAGTG  159
            |||||| || ||| |||| |||||||||||||| ||||
Sbjct  176  TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTG  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10304888545


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5