BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925596
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-... 244 2e-64
> AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-containing
protein, CER1-like, A.thaliana, ATCER1L19; blastp
match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746
CER1 {Oryza sativa} | chr5:10261017-10263283
FORWARD LENGTH=2267
Length=2267
Score = 244 bits (132), Expect = 2e-64
Identities = 173/192 (90%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 25 ATGGCGTCTAGGCCGGGAGTTCTCACGGAATGGCCATGGAGTCCCCTTGGTGGCTACAAG 84
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCGTCGAGGCCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 60
Query 85 TACCTCTTGGTTGCCCCGTTGGCGATGGCAAGCATACATTCGTACGTGACAGCTGAGGAG 144
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 T---TCTTGGTTGCCCCGTTGGCGATTGCAAGCATACATTCATACGTGACAGCTGAGGAG 117
Query 145 GAGGAGAAGGACTTA-GCGAGACTGTTGATAATAGCGCTGACGCTGTGGCGAATAGTTCA 203
|||||||||||| || | |||||| ||||| | ||| ||| ||||||| ||||| ||||
Sbjct 118 GAGGAGAAGGACCTATG-GAGACTAATGATAGTGGCGATGATGCTGTGGAGAATA-TTCA 175
Query 204 CAGCCAGATATG 215
||||||||||||
Sbjct 176 CAGCCAGATATG 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9601140059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5