BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925603

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10090.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   324    3e-88


> AT3G10090.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr3:3108810-3110026 REVERSE LENGTH=449
Length=449

 Score =  324 bits (175),  Expect = 3e-88
 Identities = 194/203 (96%), Gaps = 1/203 (0%)
 Strand=Plus/Plus

Query  20   AGAATGGATTCTCAGATTAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCA  79
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  AGAATGGATTCTCAGATCAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCA  161

Query  80   AGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCGGACCGTTACATCATGAGG  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  AGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCGGACCGTTACATCATGAGG  221

Query  140  AATGTCAAAGGACCTGTTAGAGAGGGAGATATTCTCACCCTGCTCGAGTCTGAGAGAGAA  199
            || || ||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||
Sbjct  222  AACGTTAAAGGACCTGTCAGAGAGGGAGATATTCTCACCTTGCTGGAGTCCGAGAGAGAA  281

Query  200  GCTAGAAGACTCCGTTGAATTCT  222
            ||||||||||| |||||| ||||
Sbjct  282  GCTAGAAGACTTCGTTGA-TTCT  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5