BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925606
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF5... 987 0.0
> AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF565)
| chr1:24297480-24298570 REVERSE LENGTH=979
Length=979
Score = 987 bits (534), Expect = 0.0
Identities = 605/639 (95%), Gaps = 5/639 (1%)
Strand=Plus/Plus
Query 1 AAAACTCGAGCCTGGTTCTAATGGCTTGTCAAATTCAAGCTTCACGCGTTTTCCCAATTC 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 177 AAAACTCGAGACTGGTTCTAATGGCTTGTCAAATTCAAGCTTCACGCGTTTTCCCAGTTC 236
Query 61 TGGAAATTGAAAAAGGTCTCTCCTTTATGATTAATGTCTTCCATAGGAGAAGAAGAGCTT 120
| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 237 TAGAAATTGAAAAAGGTCTCTCCTTTATGATAAATGTCTTCCATAGGAGAATAAAAGCTT 296
Query 121 CGTCCATTACTCTCACTTCATTCCCTTATCCAATGAAAAGTTTTCAGCTAAGAAGACCAA 180
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 297 CGTCCATTACTCTCACTTCATTTCCTTATCCCATGAAAAGTTTTCAGATAAGAAGACCAA 356
Query 181 ACCGGAAAATAGCGTTTGCTTTAGACACAGGTTCTTCTATTCCTGGAGATAATGGTGGAG 240
||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||
Sbjct 357 ACCGGAAAATAGCGTTTGCGTTAGACACTGGTTCTTCTATTCCTGGAGATAGTGGT-GA- 414
Query 241 GAGGACAAGAGATGAATGGAGACAGAACCGGTCTCGGTAGCACTCGGTTGGGTCGAATTG 300
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 415 -AGGGCAAGAGATGAATGGAGACAGAACCGGTCTCGGTAGCACTCGGTTAGGTAGAATTG 473
Query 301 CGGTTGCAGGAGGCAAACAGTTACTTGGGAAGATAAACTCTGCAAGAAAAAACTTCCCAA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGATTGCAGGAGGCAAACAGTTACTTGGGAAGATAAACTCTGCAAGAAAAAACTTCCCAA 533
Query 361 TGAAGATATTTCTGCTGCTTCTTGGTTTCTATACCGCCAATGCATTGGCTACCATTCTTG 420
||||||||||||||||||||||||||||||| || ||||||||| | ||||| |||||||
Sbjct 534 TGAAGATATTTCTGCTGCTTCTTGGTTTCTACACTGCCAATGCACTAGCTACTATTCTTG 593
Query 421 GACAGACTGGTGATTGGGATGTGCTTGTTGCGGGAATTGTCGTGGCTGCGATTGAAGGAA 480
||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 594 GACAGACTGGTGATTGGGATGTGCTTGTTGCCGGAATCGTCGTTGCTGCGATCGAAGGAA 653
Query 481 TCGGTATGCTTATGTATAAGAAACCGTCGTCTTCAATGTTTTCAGGGAAGTTGCAGTCTT 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 654 TCGGTATGCTTATGTATAAGAAACCGTCTTCTTCAATGTTTTCAGGGAAGTTGCAGTCTT 713
Query 541 TTGTTGTGTTTATGAATTTTTGGAAAGCTGGTGTTTGCTTAGGTCTCTTTGTTGACGCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 TTGTTGTGTTTATGAATTTTTGGAAAGCTGGTGTTTGCTTAGGTCTCTTTGTTGATGCTT 773
Query 601 TCAAGTTAGGTAGTTAAAGA-A-AAATCTTTCTTTTCTT 637
||||||| |||||||||| | | ||||||||||||||||
Sbjct 774 TCAAGTTGGGTAGTTAAAAAGACAAATCTTTCTTTTCTT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5