BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925613 Length=2421 Score E Sequences producing significant alignments: (Bits) Value AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3273 0.0 > AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). | chr1:15895285-15900055 REVERSE LENGTH=2741 Length=2741 Score = 3273 bits (1772), Expect = 0.0 Identities = 2210/2420 (91%), Gaps = 35/2420 (1%) Strand=Plus/Plus Query 19 CCATGGGAAACTCTAGAATTCAAGTTAACAAAGCTCACAAGACTAGATTT-ACCTCCAAA 77 |||||||| |||| || |||||||||||||||||||||||||| | ||| |||| ||| Sbjct 115 CCATGGGACGCTCTCGAGTTCAAGTTAACAAAGCTCACAAGACTCG-TTTCTCCTCTAAA 173 Query 78 TCTTCTCGTAATCTCCACAGAACTTCCCTCCAAGATAGTTGCCGGATTGGGAAATCAGAC 137 ||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||| | Sbjct 174 TCTTCTCGTAATCTCCATAGAACCAACCTTCAAGATAGTGGCCGGATTGGGAAATC-G-G 231 Query 138 AGTAATAACTATGTTAAAGGTGCTAAAGCTGCTCGTGTTCAGCGTGGCAAGATGCTTCGA 197 | || ||||||||||||||| |||||||||||||||||||| ||||| ||||||||| || Sbjct 232 A-TAGTAACTATGTTAAAGGAGCTAAAGCTGCTCGTGTTCAACGTGGTAAGATGCTTAGA 290 Query 198 GAGCAGAAAAGGGCAACAGTTTTGAAGGAGAAGAGAGCATCAGGAGG-ATTAAACAGTGC 256 |||||||| || ||| ||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 291 GAGCAGAAGAGAGCAGCAGTTTTGAAGGAGAAGAGAGCATCAGGAGGAATT-AACAGTGC 349 Query 257 TCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCCTCTGTGGAATTGGATTCACTTAATGA 316 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| Sbjct 350 TCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCTTCTGTGGAATTGAATTCACTTGGTGA 409 Query 317 AGATCTTTTAG-AGCTATTATCTTCTGATGGTTCTGGGGTCACTTCTTCGACAGTTGCAT 375 |||| |||| | || | |||||||||||||||||||| | |||||||||||||||||| Sbjct 410 AGATGTTTT-GAAGTTGTTATCTTCTGATGGTTCTGGAATTGCTTCTTCGACAGTTGCAT 468 Query 376 CTTCTGAGTATAAGCTTA-AAGCAACCGTGTTAAAGGCACCTCATGGGGATCTTTTGACA 434 ||||||||||||||| || |||||| ||||||||||| ||||||||||||||| ||||| Sbjct 469 CTTCTGAGTATAAGC-TACGAGCAACTGTGTTAAAGGCGCCTCATGGGGATCTTCTGACA 527 Query 435 TGCATGGAAATGGCCAAGGTTGTTGATTTGATGGCTTTTGTTGCATCTGCAAGCT-CTCC 493 || ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| Sbjct 528 TGTATGGAAATGGCCAAGGTTGCTGATTTGATGGCTTTTGTTGCATCTGCAAG-TGCTCC 586 Query 494 ATGGGAAGAGAATAAATCTAACTAT-ATAGATTCATTT-GGAAATCAGTGTCTTTCTGTG 551 ||||||||||||| ||||||| | |||||||| ||| |||| |||||||||||||||| Sbjct 587 GTGGGAAGAGAATAGCTCTAACT-TCATAGATTC-TTTCGGAAGTCAGTGTCTTTCTGTG 644 Query 552 TTTAGATCAATTGGTCTACCAAGCACCACTGTATTGATTCGTGATTTACCGAGTGAAT-T 610 |||||||||||||||||||||||||| ||||| ||||| |||||||| || |||| || | Sbjct 645 TTTAGATCAATTGGTCTACCAAGCACTACTGTGTTGATCCGTGATTTGCCCAGTG-ATGT 703 Query 611 aaaaaagaaaaaTGAGCTGAAGAAGATATGTGCCTCTCAACTTGCTTCTGAATTTCCTGA 670 ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 704 GAAAAAGAAAAATGAGATGAAAAAGATGTGTGCCTCTCAACTTGCTTCTGAATTTCCTGA 763 Query 671 GGATTGTAAGTTTTATCCAGCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATT 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 GGATTGTAAGTTTTATCCAGCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATT 823 Query 731 CAAAGCACAAAGGCTTACTGTACCTCATTGGCGGAGTCAAAGACCATATGTTGTGGCTCA 790 ||| || |||||||||||||| ||||| ||||| |||||| || |||| ||||||||| Sbjct 824 CAAGGCGCAAAGGCTTACTGTGCCTCACTGGCGAAGTCAACGATCATACATTGTGGCTC- 882 Query 791 G-AAGGTTGGGATGCTGGTGGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTG 849 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 GCAAGGCTGGGATGCTGGTGGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTG 942 Query 850 GTTACTTGCGTGCTCGCAAACTGTCTATAAATCAGCTGGTTCACGTTTCTGGCGTTGGTG 909 |||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||| | Sbjct 943 GTTACTTGCGTGCTCGCAAACTGTCTGTAAATCAACTGGTCCATGTTTCTGGCGTTGGGG 1002 Query 910 ATTTTCAGTTCTCAAAAATTGAGGTGCTAAACGAGCCATTTCCTTTGAATGAAAGGAAAA 969 ||||||| ||||| |||||||| ||||| || || ||||||||||||||||||||||||| Sbjct 1003 ATTTTCAATTCTCCAAAATTGAAGTGCTGAAGGATCCATTTCCTTTGAATGAAAGGAAAA 1062 Query 970 ATCAGAATTCCATGGAATTAGATGCTTTACATGATGAAGAGGTATTGAACTCTCTGGTTC 1029 |||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| Sbjct 1063 ATCAGAATTCCATGGAATTAGATGATTCACATGATGAAGAGGTATTGAAGTCTCTGGTTC 1122 Query 1030 CTGATCCTATAAAACAAGAGCCTTTAGTAGTTGAAAACACTCCAGATCCTTTAGCAGGGG 1089 ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1123 CTGATCCCATGAAACAAGAGCCTTTAGTAATTGAAAACACTCCAGATCCTTTAGCAGGGG 1182 Query 1090 AACAGACATGGCCAACAGAGGAAGAAATGGCTGAGGCTGACAAAAATCAGAAACAGGGAA 1149 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1183 AACAGACATGGCCAACAGAGGAAGAAATGGCTGAGGCTGACAAAAATCAGAAGCAGGGCA 1242 Query 1150 AGTTAAAGAAGAAGACTTTGCCAAGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGG 1209 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1243 GGCTAAAGAAGAAGACTTTGCCGCGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGG 1302 Query 1210 ATGACACAGATGAAGAAGATTCTGATATTGGTGATTCTGATGATAACAGTATGGTATTGG 1269 |||| ||||||||||| ||||| |||| |||||||||||||||||| |||||||||||| Sbjct 1303 ATGAAACAGATGAAGAGGATTCCGATAATGGTGATTCTGATGATAATGGTATGGTATTGG 1362 Query 1270 ATAGAGAAGAGGATGCCAATGAGGAAAGAAAGTATGACCAAGAATTTGAGGATGACGAAA 1329 |||||| ||||||| ||||| | ||| ||| |||||||||||||||||||||||||| || Sbjct 1363 ATAGAGGAGAGGATTCCAATCAAGAAGGAATGTATGACCAAGAATTTGAGGATGACGGAA 1422 Query 1330 AATCACTGAACGTGCGGGATTTTGATAGTGGAACTCAGAATGACTCCGAGATGATGGATG 1389 ||||| ||||| |||||||| |||||| || |||||||||||| ||||| ||| |||| | Sbjct 1423 AATCATTGAACCTGCGGGATATTGATACTGAAACTCAGAATGAATCCGAAATGGTGGACG 1482 Query 1390 ATGAAGACTTGACAGATGAACAAATTAAGGATGAAATAAAGAAAATCAAAGAGGCACATG 1449 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1483 ATGAAGACTTGACAGAAGAACAAATTAAGGATGAAATCAAGAAAATCAAAGAGGCATATG 1542 Query 1450 CTGATGACGAGGAATTTCCAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGAC 1509 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1543 CTGATGACGAAGAATTTCCAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGAC 1602 Query 1510 GTTTCGCAAAGTACAGGGGTCTTAAATCCTTCCGAACCTCCTCGTGGGATCCAAATGAGT 1569 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1603 GTTTTGCAAAGTACAGGGGTCTTAAATCCTTCAGAACCTCCTCGTGGGATCCAAATGAGT 1662 Query 1570 CTCTACCTCAGGACTATGCTAGAATTTTTGCTTTTGATAACGTTGCCAGGACTCAAAAGC 1629 || ||||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 1663 CTTTACCTCAGGACTATGCTAGAATTTTTGCTTTTGATAATGTCGCAAGGACTCAAAAGC 1722 Query 1630 TTGTGCTCAAGCAAGCCCTGAAGATGGAAGAAGAAGACAGAGATGATTGTGTAC-AGACT 1688 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 1723 TTGTGCTCAAGCAAGCCCTGAAGATGGAAGAAGAAGACAGAGATGATTGTGTACCA-ATT 1781 Query 1689 GGGTCATATGTCCGACTGCATATTAAGGAAGTGCCTCTTGGTGCTGCCTCTAAACTATCC 1748 ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1782 GGGTCATATGTACGGCTGCATATTAAAGAAGTGCCTCTTGGTGCTGCCTCTAAACTATCT 1841 Query 1749 TCCCTTGTGAACACAA--AACCCA-TTATAGGATTTCGCCTTATACAACACGAAATCCA- 1804 || ||||||||||||| || ||| ||||||||||| | ||| | || || ||| |||| Sbjct 1842 TCTCTTGTGAACACAACGAAACCAATTATAGGATTTGGGCTTCTGCAGCATGAA-TCCAA 1900 Query 1805 GATGTCAGTTCTGCATTTTAGTGTAAAGAAGTATGATGGTTACGAAGCTCCTATTAAAAC 1864 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1901 GATGTCGGTTCTGCATTTTAGCGTAAAGAAGTATGATGGTTACGAAGCTCCTATTAAAAC 1960 Query 1865 GAAAGAAGAACTTATGTTCCATGTTGGTTTCCGTCAAGTCATTGCAAGGCCGGTATTTTC 1924 |||||||| || |||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1961 AAAAGAAGAGCTAATGTTCCATGTTGGTTTCCGTCAATTCATTGCAAGGCCGGTATTTGC 2020 Query 1925 AACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTCTTGCATTCAGGGAGTTT 1984 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 2021 GACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTCCTGCATCCAGGGTGTTT 2080 Query 1985 CTCGTTGGCTTCAATATATGGCCCAATATCTTTCCCACCCCTTCCTTTGGTAGCTCTAAA 2044 |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || Sbjct 2081 CTCGTTGGCTTCAATATACGGCCCCATATCTTTCCCACCCCTTCCTTTGGTAGTTCTGAA 2140 Query 2045 GATATCTGAAGGGTCAGATCCT---GCCGTTGCTGCCCTTGGTTCCTTGAAAAGCATTGA 2101 ||| ||||||||||| |||||| ||| |||||||||||||||||||||||||| | || Sbjct 2141 GATTTCTGAAGGGTCGGATCCTCCTGCCATTGCTGCCCTTGGTTCCTTGAAAAGCGTAGA 2200 Query 2102 ACCCAACAAAATAATTTTAAAGAAGATAATATTAACTGGGTATCCTCAGAGAGTATCAAA 2161 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 2201 ACCCAACAAAATAATCTTAAAGAAGATAATATTAACTGGGTACCCTCAGAGAGTATCGAA 2260 Query 2162 AATGAAAGCATCAGTCAGATATATGTTCCACAACCCAGAAGACGTGAAATGGTTCAAGCC 2221 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2261 AATGAAAGCTTCAGTCAGATATATGTTCCACAACCCCGAAGACGTGAAATGGTTCAAGCC 2320 Query 2222 TGTAGAAGTGTGGTCAAAATGTGGTCGTCGTGGTCGCGTGAAGGAGCCAGTGGGCACACA 2281 ||| ||||| ||||||||||| || |||||||||||||||||||| ||||| |||||||| Sbjct 2321 TGTTGAAGTATGGTCAAAATGCGGGCGTCGTGGTCGCGTGAAGGAACCAGTAGGCACACA 2380 Query 2282 TGGGGCGATGAAATGTATATTCAATGGAGTGGTGCAGCAACATGACATTGTCTGCATGAA 2341 |||||| |||||||| ||||||||||||||||| || ||||||||| | || |||||||| Sbjct 2381 TGGGGCAATGAAATGCATATTCAATGGAGTGGTTCAACAACATGACGTAGTGTGCATGAA 2440 Query 2342 CTTGTACAAACGTGCGTA-CCCTAAGTGGCCTGAGCGTCTGTACCCGCAGCTTCTCTGAT 2400 ||||||||| || || || ||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 2441 CTTGTACAAGCGCGCTTATCCC-AAGTGGCCTGAACGTCTGTACCCACAGCTTCTCTGAT 2499 Query 2401 TCCAATTTGT-AGAATGAAG 2419 || ||||| | | ||||||| Sbjct 2500 TCGAATTTTTTA-AATGAAG 2518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120230305275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5