BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925613
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3273 0.0
> AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop containing
nucleoside triphosphate hydrolases superfamily protein
(TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins
in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833;
Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes -
905 (source: NCBI BLink). | chr1:15895285-15900055 REVERSE
LENGTH=2741
Length=2741
Score = 3273 bits (1772), Expect = 0.0
Identities = 2210/2420 (91%), Gaps = 35/2420 (1%)
Strand=Plus/Plus
Query 19 CCATGGGAAACTCTAGAATTCAAGTTAACAAAGCTCACAAGACTAGATTT-ACCTCCAAA 77
|||||||| |||| || |||||||||||||||||||||||||| | ||| |||| |||
Sbjct 115 CCATGGGACGCTCTCGAGTTCAAGTTAACAAAGCTCACAAGACTCG-TTTCTCCTCTAAA 173
Query 78 TCTTCTCGTAATCTCCACAGAACTTCCCTCCAAGATAGTTGCCGGATTGGGAAATCAGAC 137
||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||| |
Sbjct 174 TCTTCTCGTAATCTCCATAGAACCAACCTTCAAGATAGTGGCCGGATTGGGAAATC-G-G 231
Query 138 AGTAATAACTATGTTAAAGGTGCTAAAGCTGCTCGTGTTCAGCGTGGCAAGATGCTTCGA 197
| || ||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||
Sbjct 232 A-TAGTAACTATGTTAAAGGAGCTAAAGCTGCTCGTGTTCAACGTGGTAAGATGCTTAGA 290
Query 198 GAGCAGAAAAGGGCAACAGTTTTGAAGGAGAAGAGAGCATCAGGAGG-ATTAAACAGTGC 256
|||||||| || ||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 291 GAGCAGAAGAGAGCAGCAGTTTTGAAGGAGAAGAGAGCATCAGGAGGAATT-AACAGTGC 349
Query 257 TCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCCTCTGTGGAATTGGATTCACTTAATGA 316
||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct 350 TCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCTTCTGTGGAATTGAATTCACTTGGTGA 409
Query 317 AGATCTTTTAG-AGCTATTATCTTCTGATGGTTCTGGGGTCACTTCTTCGACAGTTGCAT 375
|||| |||| | || | |||||||||||||||||||| | ||||||||||||||||||
Sbjct 410 AGATGTTTT-GAAGTTGTTATCTTCTGATGGTTCTGGAATTGCTTCTTCGACAGTTGCAT 468
Query 376 CTTCTGAGTATAAGCTTA-AAGCAACCGTGTTAAAGGCACCTCATGGGGATCTTTTGACA 434
||||||||||||||| || |||||| ||||||||||| ||||||||||||||| |||||
Sbjct 469 CTTCTGAGTATAAGC-TACGAGCAACTGTGTTAAAGGCGCCTCATGGGGATCTTCTGACA 527
Query 435 TGCATGGAAATGGCCAAGGTTGTTGATTTGATGGCTTTTGTTGCATCTGCAAGCT-CTCC 493
|| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 528 TGTATGGAAATGGCCAAGGTTGCTGATTTGATGGCTTTTGTTGCATCTGCAAG-TGCTCC 586
Query 494 ATGGGAAGAGAATAAATCTAACTAT-ATAGATTCATTT-GGAAATCAGTGTCTTTCTGTG 551
||||||||||||| ||||||| | |||||||| ||| |||| ||||||||||||||||
Sbjct 587 GTGGGAAGAGAATAGCTCTAACT-TCATAGATTC-TTTCGGAAGTCAGTGTCTTTCTGTG 644
Query 552 TTTAGATCAATTGGTCTACCAAGCACCACTGTATTGATTCGTGATTTACCGAGTGAAT-T 610
|||||||||||||||||||||||||| ||||| ||||| |||||||| || |||| || |
Sbjct 645 TTTAGATCAATTGGTCTACCAAGCACTACTGTGTTGATCCGTGATTTGCCCAGTG-ATGT 703
Query 611 aaaaaagaaaaaTGAGCTGAAGAAGATATGTGCCTCTCAACTTGCTTCTGAATTTCCTGA 670
||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 704 GAAAAAGAAAAATGAGATGAAAAAGATGTGTGCCTCTCAACTTGCTTCTGAATTTCCTGA 763
Query 671 GGATTGTAAGTTTTATCCAGCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GGATTGTAAGTTTTATCCAGCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATT 823
Query 731 CAAAGCACAAAGGCTTACTGTACCTCATTGGCGGAGTCAAAGACCATATGTTGTGGCTCA 790
||| || |||||||||||||| ||||| ||||| |||||| || |||| |||||||||
Sbjct 824 CAAGGCGCAAAGGCTTACTGTGCCTCACTGGCGAAGTCAACGATCATACATTGTGGCTC- 882
Query 791 G-AAGGTTGGGATGCTGGTGGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTG 849
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GCAAGGCTGGGATGCTGGTGGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTG 942
Query 850 GTTACTTGCGTGCTCGCAAACTGTCTATAAATCAGCTGGTTCACGTTTCTGGCGTTGGTG 909
|||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||| |
Sbjct 943 GTTACTTGCGTGCTCGCAAACTGTCTGTAAATCAACTGGTCCATGTTTCTGGCGTTGGGG 1002
Query 910 ATTTTCAGTTCTCAAAAATTGAGGTGCTAAACGAGCCATTTCCTTTGAATGAAAGGAAAA 969
||||||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1003 ATTTTCAATTCTCCAAAATTGAAGTGCTGAAGGATCCATTTCCTTTGAATGAAAGGAAAA 1062
Query 970 ATCAGAATTCCATGGAATTAGATGCTTTACATGATGAAGAGGTATTGAACTCTCTGGTTC 1029
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 1063 ATCAGAATTCCATGGAATTAGATGATTCACATGATGAAGAGGTATTGAAGTCTCTGGTTC 1122
Query 1030 CTGATCCTATAAAACAAGAGCCTTTAGTAGTTGAAAACACTCCAGATCCTTTAGCAGGGG 1089
||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1123 CTGATCCCATGAAACAAGAGCCTTTAGTAATTGAAAACACTCCAGATCCTTTAGCAGGGG 1182
Query 1090 AACAGACATGGCCAACAGAGGAAGAAATGGCTGAGGCTGACAAAAATCAGAAACAGGGAA 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1183 AACAGACATGGCCAACAGAGGAAGAAATGGCTGAGGCTGACAAAAATCAGAAGCAGGGCA 1242
Query 1150 AGTTAAAGAAGAAGACTTTGCCAAGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGG 1209
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1243 GGCTAAAGAAGAAGACTTTGCCGCGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGG 1302
Query 1210 ATGACACAGATGAAGAAGATTCTGATATTGGTGATTCTGATGATAACAGTATGGTATTGG 1269
|||| ||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 1303 ATGAAACAGATGAAGAGGATTCCGATAATGGTGATTCTGATGATAATGGTATGGTATTGG 1362
Query 1270 ATAGAGAAGAGGATGCCAATGAGGAAAGAAAGTATGACCAAGAATTTGAGGATGACGAAA 1329
|||||| ||||||| ||||| | ||| ||| |||||||||||||||||||||||||| ||
Sbjct 1363 ATAGAGGAGAGGATTCCAATCAAGAAGGAATGTATGACCAAGAATTTGAGGATGACGGAA 1422
Query 1330 AATCACTGAACGTGCGGGATTTTGATAGTGGAACTCAGAATGACTCCGAGATGATGGATG 1389
||||| ||||| |||||||| |||||| || |||||||||||| ||||| ||| |||| |
Sbjct 1423 AATCATTGAACCTGCGGGATATTGATACTGAAACTCAGAATGAATCCGAAATGGTGGACG 1482
Query 1390 ATGAAGACTTGACAGATGAACAAATTAAGGATGAAATAAAGAAAATCAAAGAGGCACATG 1449
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1483 ATGAAGACTTGACAGAAGAACAAATTAAGGATGAAATCAAGAAAATCAAAGAGGCATATG 1542
Query 1450 CTGATGACGAGGAATTTCCAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGAC 1509
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 CTGATGACGAAGAATTTCCAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGAC 1602
Query 1510 GTTTCGCAAAGTACAGGGGTCTTAAATCCTTCCGAACCTCCTCGTGGGATCCAAATGAGT 1569
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1603 GTTTTGCAAAGTACAGGGGTCTTAAATCCTTCAGAACCTCCTCGTGGGATCCAAATGAGT 1662
Query 1570 CTCTACCTCAGGACTATGCTAGAATTTTTGCTTTTGATAACGTTGCCAGGACTCAAAAGC 1629
|| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1663 CTTTACCTCAGGACTATGCTAGAATTTTTGCTTTTGATAATGTCGCAAGGACTCAAAAGC 1722
Query 1630 TTGTGCTCAAGCAAGCCCTGAAGATGGAAGAAGAAGACAGAGATGATTGTGTAC-AGACT 1688
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1723 TTGTGCTCAAGCAAGCCCTGAAGATGGAAGAAGAAGACAGAGATGATTGTGTACCA-ATT 1781
Query 1689 GGGTCATATGTCCGACTGCATATTAAGGAAGTGCCTCTTGGTGCTGCCTCTAAACTATCC 1748
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1782 GGGTCATATGTACGGCTGCATATTAAAGAAGTGCCTCTTGGTGCTGCCTCTAAACTATCT 1841
Query 1749 TCCCTTGTGAACACAA--AACCCA-TTATAGGATTTCGCCTTATACAACACGAAATCCA- 1804
|| ||||||||||||| || ||| ||||||||||| | ||| | || || ||| ||||
Sbjct 1842 TCTCTTGTGAACACAACGAAACCAATTATAGGATTTGGGCTTCTGCAGCATGAA-TCCAA 1900
Query 1805 GATGTCAGTTCTGCATTTTAGTGTAAAGAAGTATGATGGTTACGAAGCTCCTATTAAAAC 1864
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1901 GATGTCGGTTCTGCATTTTAGCGTAAAGAAGTATGATGGTTACGAAGCTCCTATTAAAAC 1960
Query 1865 GAAAGAAGAACTTATGTTCCATGTTGGTTTCCGTCAAGTCATTGCAAGGCCGGTATTTTC 1924
|||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1961 AAAAGAAGAGCTAATGTTCCATGTTGGTTTCCGTCAATTCATTGCAAGGCCGGTATTTGC 2020
Query 1925 AACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTCTTGCATTCAGGGAGTTT 1984
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 2021 GACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTCCTGCATCCAGGGTGTTT 2080
Query 1985 CTCGTTGGCTTCAATATATGGCCCAATATCTTTCCCACCCCTTCCTTTGGTAGCTCTAAA 2044
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 2081 CTCGTTGGCTTCAATATACGGCCCCATATCTTTCCCACCCCTTCCTTTGGTAGTTCTGAA 2140
Query 2045 GATATCTGAAGGGTCAGATCCT---GCCGTTGCTGCCCTTGGTTCCTTGAAAAGCATTGA 2101
||| ||||||||||| |||||| ||| |||||||||||||||||||||||||| | ||
Sbjct 2141 GATTTCTGAAGGGTCGGATCCTCCTGCCATTGCTGCCCTTGGTTCCTTGAAAAGCGTAGA 2200
Query 2102 ACCCAACAAAATAATTTTAAAGAAGATAATATTAACTGGGTATCCTCAGAGAGTATCAAA 2161
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2201 ACCCAACAAAATAATCTTAAAGAAGATAATATTAACTGGGTACCCTCAGAGAGTATCGAA 2260
Query 2162 AATGAAAGCATCAGTCAGATATATGTTCCACAACCCAGAAGACGTGAAATGGTTCAAGCC 2221
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2261 AATGAAAGCTTCAGTCAGATATATGTTCCACAACCCCGAAGACGTGAAATGGTTCAAGCC 2320
Query 2222 TGTAGAAGTGTGGTCAAAATGTGGTCGTCGTGGTCGCGTGAAGGAGCCAGTGGGCACACA 2281
||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct 2321 TGTTGAAGTATGGTCAAAATGCGGGCGTCGTGGTCGCGTGAAGGAACCAGTAGGCACACA 2380
Query 2282 TGGGGCGATGAAATGTATATTCAATGGAGTGGTGCAGCAACATGACATTGTCTGCATGAA 2341
|||||| |||||||| ||||||||||||||||| || ||||||||| | || ||||||||
Sbjct 2381 TGGGGCAATGAAATGCATATTCAATGGAGTGGTTCAACAACATGACGTAGTGTGCATGAA 2440
Query 2342 CTTGTACAAACGTGCGTA-CCCTAAGTGGCCTGAGCGTCTGTACCCGCAGCTTCTCTGAT 2400
||||||||| || || || ||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 2441 CTTGTACAAGCGCGCTTATCCC-AAGTGGCCTGAACGTCTGTACCCACAGCTTCTCTGAT 2499
Query 2401 TCCAATTTGT-AGAATGAAG 2419
|| ||||| | | |||||||
Sbjct 2500 TCGAATTTTTTA-AATGAAG 2518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120230305275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5