BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925614
Length=2491
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65470.1 | Symbols: FAS1, NFB2 | chromatin assembly factor-1... 3725 0.0
> AT1G65470.1 | Symbols: FAS1, NFB2 | chromatin assembly factor-1
(FASCIATA1) (FAS1) | chr1:24319748-24324040 REVERSE LENGTH=2767
Length=2767
Score = 3725 bits (2017), Expect = 0.0
Identities = 2350/2506 (94%), Gaps = 42/2506 (2%)
Strand=Plus/Plus
Query 7 GttttttttttATGCGATGGAAGAAGTTTCGACGGTGAATGAAATTGAAAATCGGAAGAC 66
||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 147 GTTTTTTTTTT-TGCGATGGACGAAGTTTCGACGGTGAATGAAAATGAGAATCGGAAGAC 205
Query 67 GATGATGA-AGCCGAATAAGCCGAATAAGCGGAAGAGAGAACCCGCGGCGGTTGAGAATC 125
|||||| | |||| || |||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 206 GATGAT-AGAGCCAAAGAAGCTGAATAAGCGGAAGAGAGAACCCACGGCGATTGAGAATC 264
Query 126 TAACTTCTGAGGAGAAAGAAGCTCAGATCTCGTCGTTGAATTTAGAGATGAAAGGGCTTT 185
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 265 TAACATCTGAGGAGAAAGAATCTCAGATCTCGTCGTTGAATCTAGAGATGAAAGGGCTTT 324
Query 186 TCGCGTATTTTC-GAGAAGTTATGGATCAA-AGTAAGACAACAGATCTGTTTTCTAGG-T 242
| | || |||| |||||||||||||| || ||||||| |||||||||||||||| || |
Sbjct 325 TTGATTA-TTTCAGAGAAGTTATGGAT-AAGAGTAAGAGAACAGATCTGTTTTCT-GGAT 381
Query 243 TTAGTGAATGTTCGTC-TGTGAATTCAATGGTGGCTTTGTTGATGGAGGAGATGAGTTTG 301
||||||||||||| || | ||||||| |||||||||||||| |||||||| |||||||||
Sbjct 382 TTAGTGAATGTTCCTCAT-TGAATTCGATGGTGGCTTTGTTAATGGAGGAAATGAGTTTG 440
Query 302 CCTTTGTCGAAGCTTGTTGATGAGATTTACTTGAAATTGAAGGAGAAGATTGAAAGTGTT 361
|| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 441 CCGTTGTCGAAGCTTGTAGATGAGATTTACTTGAAATTGAAGGAGAAGACTGAAAGTGTT 500
Query 362 ACTATGGTAGCTGTGAAGAGTGCTATTGTTTCTGTAGGTCAGAGAGTGAGTTATGGTGTG 421
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||
Sbjct 501 ACTATGGTAGCTGTGAAGAGTGCTGTTGTTTCTGTTGGTCAGAGAGTTAGTTACGGTGTG 560
Query 422 CTCAATGCAGATGCTGATGTTTTGGAGGATGATACTGAATCTTGTCTTTGGTGCTGGGAG 481
|| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 561 CTTAACGTAGATGCTGATGTTTTGGAGGATGATTCTGAATCTTGTCTTTGGTGCTGGGAG 620
Query 482 ACGAGAGATCTGAAAATGATGCCGAATTCTGTTCGTGGAGTGTTAAAAATTCGCCGGACT 541
||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 621 ACGAGAGATCTGAAAATCATGCCGAGTTCCGTTCGTGGAGTGTTAAAACTTCGCCGGACT 680
Query 542 TGTCGGAAGAAGATTCATGAAAGGATTACAGCAGTTTCTGCAATGTTAGCTGTATTACAA 601
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 681 TGTCGAAAGAAGATTCATGAAAGGATTACAGCAGTTTCTGCAATGTTAGCTGCATTACAA 740
Query 602 AGAGAAGAAACTGAAAAGTCGTGGAGATCTGATTTGAGTAAAGCTTCTGAGAAGCTTGGT 661
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 741 AGAGAAGAAACTGAAAAGTTGTGGAGATCTGATTTGAGTAAAGCTGCTGAGAAGCTTGGT 800
Query 662 AAAATACTGAGTGAGGTGGATATTCGATCATTCATGGATAACATGATGCAGAAGAACAGC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AAAATACTGAGTGAGGTGGATATTCGATCATTCATGGATAACATGATGCAGAAGAACAGC 860
Query 722 ACAGAGATGGCTGAGAAAGACTCAAAGAGAGAAGAGAAGCTGCTTCTTAAACAGTTGGAG 781
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 861 TCAGAAATGGCTGAGAAAGACTCAAAGAGAGAAGAGAAGCTGCTTCTTAAACAATTGGAG 920
Query 782 AAAAGTAGATGTGAAGCTGAGAAGGAAAAGAAGAGAATGGAACGTCAAGTATTGAAAGAA 841
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 921 AAAAATAGATGTGAAGCTGAGAAGGAGAAGAAGAGAATGGAACGTCAAGTATTGAAAGAA 980
Query 842 AGATTGCAACAAGAAAAAGAGCAGAAGCTACTGCAGAAAGCAATTATTGATGAAAATAAT 901
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 981 AAATTGCAACAAGAAAAAGAGCAGAAGCTACTGCAGAAAGCAATTGTTGATGAAAATAAT 1040
Query 902 AAAGAAAAGGAAGAGACTGAGTCAAGAAAACGGATAAAGAAACAGCAAGATGAGTCGGAG 961
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AAAGAAAAAGAAGAGACAGAGTCAAGAAAACGGATAAAGAAACAGCAAGATGAGTCGGAG 1100
Query 962 AAGGAGCAGAAGCGTAGAGAGAAGGAACAAGCCGAGCTAAAGAAGCAACTTCAAGTACAG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AAGGAGCAGAAGCGTAGAGAGAAGGAACAAGCCGAGCTAAAGAAGCAACTTCAAGTACAG 1160
Query 1022 AAACAAGCTTCAATCATGGAGCGGTTTCTTaaaaaaaGTAAAGACAGTTCAGTGACCCAA 1081
|||||||||||||||||||| |||||||||||||| || ||||| |||||| ||||||||
Sbjct 1161 AAACAAGCTTCAATCATGGAACGGTTTCTTAAAAAGAGCAAAGATAGTTCATTGACCCAA 1220
Query 1082 CCCAAACTTCCTTCCAGTGAAGTAACTGCTCAAGAGCCGTCATGTACAAAACATGATAAT 1141
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||
Sbjct 1221 CCCAAACTTCCTTCCAGTGAAGTAACTGCTCAGGAGCTGTCATGTACAAAACATGAGAAT 1280
Query 1142 GAAAGTGGAACAGTTATTCAGGCCATCGACAACGCCTTTTCAACAACTTGTGAAGCTACA 1201
|||| ||||| |||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1281 GAAATTGGAAAAGTTGTTCAGGCAATTGACAACGCCTTTTCAACAACTTGTGAAGCTACA 1340
Query 1202 GTTGATGATATTCGCAGGGAACACTTTGCTTCCTGGCGTCAGTTGGGTCATTCGCTCTTG 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1341 GTTGATGATATTCGCAGGGAACACTTTGCTTCCTGGCGTCAGTTGGGTCATTTGCTCTCG 1400
Query 1262 AGTTCGAAAAAGCATTGGGGGATGCGTAGGCAGCCTAAAAGTGAACTGTTTCCAAAACTA 1321
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1401 AGTTCGAAAAAACATTGGGGGATGCGTAGGCAGCCTAAGAGTGAACTGTTTCCAAAACTA 1460
Query 1322 AAACTAGCTACA--T----------C--C-GATGGTGAACCTAACATGGAGAAGCAAGGG 1366
|||||| ||||| | | | || |||||||||||||||||||||||||||
Sbjct 1461 AAACTATCTACAAATAGTGGAGTAACATCTGACGGTGAACCTAACATGGAGAAGCAAGGG 1520
Query 1367 GATGGACGTGAAGAGAAAAACTTTGATGGTGTAACTTGCATTAGTCAGTGCGAGTCTTCC 1426
|||||| |||||||||| |||||||||||| | ||| | || || | |||||
Sbjct 1521 GATGGATGTGAAGAGAATAACTTTGATGGT--AG---GCAGT-GTAAG--C----CTTCC 1568
Query 1427 TCATCTGATCGTAAGAAGTCCAGGAGGGCCAAGCAGTTGCTACAATTTGATAAAAGCTGC 1486
|||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1569 TCATCTAATCGTAAGAAGTCCAGGAGGGTCAAGCAGTTGTTACAATTTGATAAAAGCTGC 1628
Query 1487 AGACCAGGCTTTTATGGTATCTGGCCTAGCCAAAGTCAAGTTGTAAAGCCACGTCGTCCT 1546
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1629 AGACCAGGCTTTTATGGTATCTGGCCCAGCCAAAGTCAAGTTGTAAAGCCACGTCGTCCT 1688
Query 1547 CTGCAAAAGGATCCAGAATTGGATTATGAAGTTGATAGTGATGAAGAATGGGAAGAGGAA 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 CTGCAAAAGGATCCAGAATTGGATTATGAAGTTGATAGTGATGAAGAATGGGAAGAGGAA 1748
Query 1607 GAAGCTGGTGAAAGCCTTTCAGATTGTGAGAAAGATGAAGATGACAGTTTGGAAGAAGGG 1666
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1749 GAAGCTGGTGAAAGCCTTTCAGATTGTGAGAAAGATGAAGACGAAAGTTTGGAAGAAGGA 1808
Query 1667 TGTTCAAAGGCTGATGATGAAGATGATAGTGAAGATGACTTTATGGTTCCTGATGGATAT 1726
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1809 TGTTCAAAGGCTGATGATGAAGATGATAGTGAAGATGACTTTATGGTGCCTGATGGATAT 1868
Query 1727 CTATCAGAAGATGAGGGGGTCCAAGTGGACAGAATGGACATTGATCCGGCTGAACAGGAT 1786
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1869 CTCTCAGAAGATGAGGGGGTCCAAGTGGACAGAATGGACATTGATCCGTCTGAACAGGAT 1928
Query 1787 GCAAGTACGCCATCATCTAAGCAAGATCAAGAAAATCAAGAGTTTTGCATATTACTCCAA 1846
|||| |||| |||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1929 GCAAATACGACATCATCTAAGCAAGATCAAGAAAGTCCAGAGTTTTGCGCATTACTCCAA 1988
Query 1847 CAACAAAAACATCTGCAAAGTTTAACTGACCACGCTCTCAAGAAAACGCAGCCACTGATC 1906
||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 1989 CAACAAAAACATCTGCAAAATTTAACTGACCATGCTCTGAAGAAAACGCAGCCACTGATC 2048
Query 1907 ATATGTAACCTAACGCATGAGAAGGTCCCTCTCTTAGCTGCTAAAGATCTAGAAGGGACA 1966
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2049 ATATGTAACCTAACTCATGAGAAGGTCTCTCTCTTAGCTGCTAAAGATCTAGAAGGGACA 2108
Query 1967 CAAAAAGTGGAACAAATATGTCTACGAGCTCTCGTAGTGCGACCATTCCCTTGGTCTTCT 2026
|||||||| |||||||||||||| ||||||||| | ||||||| ||||||||||||||||
Sbjct 2109 CAAAAAGTAGAACAAATATGTCTGCGAGCTCTCATGGTGCGACAATTCCCTTGGTCTTCT 2168
Query 2027 CTCATCGAGATATCAATCAATGACATTCAAGATGAGGATCTAGAAACCAACAAGTCTACT 2086
||||| |||||||| ||||| |||||||||||||| |||| |||| ||| ||||| | ||
Sbjct 2169 CTCATTGAGATATCGATCAACGACATTCAAGATGAAGATCAAGAAGCCAGCAAGTTTTCT 2228
Query 2087 TGTAGCCAGAGCACTCCTCCATCTAATTCAAAAGCAAAA-TCCATACCAGACTCAGATTT 2145
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2229 TGTAGCCAGAGCACTCCTCCATCTAATTCAAAAGCAAAAATC-ATACCAGACTCAGATTT 2287
Query 2146 GCTTACAGTTGTATCAACTATTCAATCATGCTCTCAAGGTATCAATAGAGTAGTTGAAAC 2205
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2288 GCTTACAGTTGTATCAACTATTCAATCATGCTCTCAAGGTATCAATAGGGTAGTTGAAAC 2347
Query 2206 ATTACAGCAGAAGTTCCCTGATGTTCCAAAGACCAAGCTTAGACAAAAAGTGCGTGAAAT 2265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 ATTACAGCAGAAGTTCCCTGATGTTCCAAAGACCAAGCTTAGACAAAAAGTGCGTGAAAT 2407
Query 2266 ATCAGATTTCGAGGATAGTCGTTGGCAGGTAAAGAAAGAAGTATTAACGAAGCTTGGATT 2325
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2408 ATCAGATTTCGAGGATAGTCGTTGGCAGGTAAAGAAAGAAGTATTGACAAAGCTTGGATT 2467
Query 2326 ATCACCGTCACCAGATAAAGGCGGTAAGAGATTACCGAAAACGATATCTACATTCTTCTC 2385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2468 ATCACCGTCACCAGATAAAGGCGGTAAGAGATTACCGAAAACGATATCTACATTCTTCTC 2527
Query 2386 AAAACGTTGTTTGCCTCCATCCACAAAGCCACAACCTACAGTTGAAGACGCATCAGAGAG 2445
|||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 2528 AAAACGTTGTTTACCTCCATCCACAAAACCACAACCTGCAGTTGAAGACGCAGCAGAGAG 2587
Query 2446 ATTGGAAAACGAAAATGCTTGAGTCT-CTGCACAGTTTCCATCTTT 2490
|||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 2588 ATTGGAAAACGAAAATGCTTAAGTCTACT-CACAGTTTCCATCTTT 2632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123611347552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5