BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925616
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65480.1 | Symbols: FT | PEBP (phosphatidylethanolamine-bind... 931 0.0
AT4G20370.1 | Symbols: TSF | PEBP (phosphatidylethanolamine-bin... 499 1e-140
> AT1G65480.1 | Symbols: FT | PEBP (phosphatidylethanolamine-binding
protein) family protein | chr1:24331428-24333934 FORWARD
LENGTH=855
Length=855
Score = 931 bits (504), Expect = 0.0
Identities = 546/567 (96%), Gaps = 0/567 (0%)
Strand=Plus/Plus
Query 1 CTGTTTGTTTAAGATCAAAGATGTCTATAAATATAAGAGACCCTCTTATAGTAAGCAGAG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CTGTTTGTTCAAGATCAAAGATGTCTATAAATATAAGAGACCCTCTTATAGTAAGCAGAG 122
Query 61 TTGTTGGAGACATTCTTGATCCGTTTAATAGATCGATCTCTCTAAGGGTTACTTATGGCC 120
||||||||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 123 TTGTTGGAGACGTTCTTGATCCGTTTAATAGATCAATCACTCTAAAGGTTACTTATGGCC 182
Query 121 AAAGAGAGGTGACTAATGGTTTGGATCTAAGGCCTTCTCAAGTCCAGAACAAGCCAAGAG 180
||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||
Sbjct 183 AAAGAGAGGTGACTAATGGCTTGGATCTAAGGCCTTCTCAGGTTCAAAACAAGCCAAGAG 242
Query 181 TTGAGATTGGTGGAGAAGACCTCAGGAACTTCTACACTTTGGTTATGGTGGATCCAGATG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 243 TTGAGATTGGTGGAGAAGACCTCAGGAACTTCTATACTTTGGTTATGGTGGATCCAGATG 302
Query 241 TTCCTAGTCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCC 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTCCAAGTCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCC 362
Query 301 CTGCTACAACTGGAACAACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGTCCCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTGCTACAACTGGAACAACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGTCCCA 422
Query 361 CTGCGGGAATTCATCGTATCGTGGTGATATTGTTTCGACAGCTTGGGAGGCAAACAGTGT 420
|||| |||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct 423 CTGCAGGAATTCATCGTGTCGTGTTTATATTGTTTCGACAGCTTGGCAGGCAAACAGTGT 482
Query 421 ATGCACCAGGGTGGCGCCAGAACTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTCG 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 483 ATGCACCAGGGTGGCGCCAGAACTTCAACACTCGCGAGTTTGCTGAGATCTACAATCTCG 542
Query 481 GCCTTCCCGTGGCCGCGGTTTTCTACAACTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAA 540
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 543 GCCTTCCCGTGGCCGCAGTTTTCTACAATTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAA 602
Query 541 GAATTTAGATGGATTCTTCCTTTATAA 567
|| ||||||||| ||||||||||||||
Sbjct 603 GACTTTAGATGGCTTCTTCCTTTATAA 629
> AT4G20370.1 | Symbols: TSF | PEBP (phosphatidylethanolamine-binding
protein) family protein | chr4:11000771-11002996 REVERSE
LENGTH=799
Length=799
Score = 499 bits (270), Expect = 1e-140
Identities = 458/548 (84%), Gaps = 15/548 (3%)
Strand=Plus/Plus
Query 11 AAGATCAAAGATGTCTATAAAT-ATAAGAGACCCTCTTATAGTAAGCAGAGTTGTTGGAG 69
||||| ||| |||||| ||| | | ||||| |||||| | || |||| ||||||||||
Sbjct 23 AAGAT-AAATATGTCTTTAAGTCGT-AGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAG 80
Query 70 ACATTCTTGATCCGTTT-AATAGATCGATCTCTC-TAAGGGTTACTTATGGCCAAAGAGA 127
| |||||||||| ||| | || | | |||||| ||| ||| ||||||||||| |||||
Sbjct 81 ATGTTCTTGATCC-TTTCACGAGGTTGGTCTCTCTTAA-GGTCACTTATGGCCATAGAGA 138
Query 128 GGTGACTAATGGTTTGGATCTAAGGCCTTCTCAAGTCCAGAACAAGCCAAGAGTTGAGAT 187
||| |||||||| ||||||||||||||||||||||| | |||||| |||| ||| |||||
Sbjct 139 GGTTACTAATGGCTTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGAT 198
Query 188 TGGTGGAGAAGACCTCAGGAACTTCTACACTTTGGTTATGGTGGATCCAGATGTTCCTAG 247
||| ||||| ||| |||| || |||||||| ||||||||||||||||||||||| || ||
Sbjct 199 TGGAGGAGACGACTTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAG 258
Query 248 TCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCCCTGCTAC 307
||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 259 TCCAAGCAACCCTCACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCAC 318
Query 308 AACTGGAACA-ACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGT-CCCACTGCG 365
||||||| | |||||||||||||| | ||||| ||||| | |||| || ||| || ||
Sbjct 319 CACTGGAA-ATGCCTTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCT-CG 376
Query 366 GGAATTCATCGTATCGTGGTGATATTGTTTCGACAGCTTGGGAGGCAAACAGTGTATGCA 425
|||||||||||||| ||| || ||||||| || || || || || ||||| || ||||||
Sbjct 377 GGAATTCATCGTATTGTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCA 436
Query 426 CCAGGGTGGCGCCAGA-ACTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTCGGCCT 484
|| ||||||||||| | | ||||||||||||||||||||||||||||||||||| || ||
Sbjct 437 CCGGGGTGGCGCCA-ACAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCT 495
Query 485 TCCCGTGGCCGCGGTTTT-CTACAACTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAAGAA 543
||| ||||| || | || || |||||| |||||||||| |||||| || ||||||||||
Sbjct 496 TCCTGTGGCTGCC-TCTTACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAA 554
Query 544 TTTAGATG 551
||||||
Sbjct 555 CGTAGATG 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5