BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925636

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   416    5e-116


> AT1G65500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant 
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G65486.1); 
Has 23 Blast hits to 23 proteins in 2 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24357867-24358616 
FORWARD LENGTH=522
Length=522

 Score =  416 bits (225),  Expect = 5e-116
 Identities = 279/304 (92%), Gaps = 7/304 (2%)
 Strand=Plus/Plus

Query  6    aaaaCGCAACGAAAGAG-AAATGGGT-TCGAAGTCTACAAATATTTCTGCACTTT-TGTT  62
            |||||||||| || ||| |||||||| | ||||||| |||||||| ||||| ||| ||||
Sbjct  1    AAAACGCAACTAAGGAGAAAATGGGTAT-GAAGTCTCCAAATATTGCTGCA-TTTATGTT  58

Query  63   AACACTGCTTCTTATACTTTTCACTCTTTCCTCTCAGCTTGAAGTCGTGGAATGTACAGG  122
            | |||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct  59   ACCACTGCTTCTTATACTTTTCACGCTTTCCTCTCAGCTTAAAGTCGTGGAATCTACAGG  118

Query  123  CCGCAAAC-TGTCGTGGGGGTTTTCGGGAACGCCTATCGTGTACACACCACCTTCAAGGT  181
            |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  119  CCGCAAACTTG-CGTGGGGGTTTTCGGGAACACCTATCGTGTACACACCACCTTCAAGGT  177

Query  182  CATGTGGAACTTCTCCAGCAGTATTCACTTGGAAGTGGAGGAGACCCCGACCATGCAGGC  241
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  178  CATGTGGAACTTCTCCAGCAGTATTCACTTCGAAGTGGAGGAGACCCCGACCATGCAGGC  237

Query  242  TTCCTCCAGGAAGTTATATTCCTGCTTCTAATGAATCACCTTAACTATGTGCGTCTGTGT  301
            |||||||||| |||||||||||||||||| |  |||| ||||||||| || | |||||||
Sbjct  238  TTCCTCCAGGCAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTACGTACTTCTGTGT  297

Query  302  CTTT  305
            ||||
Sbjct  298  CTTT  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14125237469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5