BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925637

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65510.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   248    1e-65


> AT1G65510.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: endomembrane system; EXPRESSED IN: 9 
plant structures; EXPRESSED DURING: LP.06 six leaves visible, 
LP.04 four leaves visible, 4 anthesis, petal differentiation 
and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G65486.1); 
Has 22 Blast hits to 22 proteins in 2 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:24359453-24360081 FORWARD LENGTH=480
Length=480

 Score =  248 bits (134),  Expect = 1e-65
 Identities = 150/158 (95%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  18   AAAATGGGTTCAAAGACATCATCACATATGGTTGCTCTTCTCTTATCTCTTCTCATTCTG  77
            ||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct  1    AAAATGGGTTCGAAGACATCAACAAATATGGTTGCTCTTCTCTTATCTCTTCTTATTCTG  60

Query  78   ATTTTCACTCTTTCCTCTCAAATTAGAGTCGTCGAGGCTACAAGCCGCAAACTTGCAAAC  137
            ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct  61   ATTTTCACTCTTTCCTCTCAAGTTAAAGTCGTCGAGGCTACAAGTCGCAAACTTGCAAAC  120

Query  138  GGAAGGCCCATTGTGTGGACTCCGGCATCTAGATCATG  175
            ||||||||||| ||||||||||||||||||||||||||
Sbjct  121  GGAAGGCCCATCGTGTGGACTCCGGCATCTAGATCATG  158



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8702133723


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5