BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925638

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65520.1 | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3), d...   287    4e-77


> AT1G65520.1 | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3), 
delta(2)-enoyl CoA isomerase 1 | chr1:24361032-24361993 REVERSE 
LENGTH=962
Length=962

 Score =  287 bits (155),  Expect = 4e-77
 Identities = 215/243 (88%), Gaps = 7/243 (3%)
 Strand=Plus/Plus

Query  7    AGTTCCAGCGTGATTTATGGCTGTTATTA-GGATGAAGATTTGTTCTCCGACGGCGACAA  65
            |||||| ||||| |||||||||||||||| || | |||||| |||||||| |||| | ||
Sbjct  508  AGTTCCGGCGTGGTTTATGGCTGTTATTAGGGGT-AAGATTGGTTCTCCGGCGGCCAGAA  566

Query  66   GGGATGTGATGTTTACGTCGGCGAAAGTGACGGCGGATGTGGGTGT-AGAGATGGGGATT  124
            ||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct  567  GGGATGTGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTA-AGATGGGGATT  625

Query  125  GTTGATTCGGCTTATGATAGTGCAGCGGGGACGGTTGAAGTCGCCGTTAAGTTAGGTGAG  184
            ||||||||||| |||| |||||| |||| ||||||||||| |||| ||||||||||||||
Sbjct  626  GTTGATTCGGCGTATGGTAGTGCGGCGGAGACGGTTGAAGCCGCCATTAAGTTAGGTGAG  685

Query  185  GAGATTATT-AGGCGTGGTGGTGATGAACACGTGTATGGTAAGATGGGAGAGACTCTTTG  243
            |||||| || ||  | |||||||||| ||||||||||||||||||| |||||| ||||| 
Sbjct  686  GAGATTGTTCAGA-GAGGTGGTGATGGACACGTGTATGGTAAGATGAGAGAGAGTCTTT-  743

Query  244  TAA  246
            |||
Sbjct  744  TAA  746



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13119882489


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5