BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925639

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   438    1e-122


> AT1G65500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant 
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G65486.1); 
Has 23 Blast hits to 23 proteins in 2 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24357867-24358616 
FORWARD LENGTH=522
Length=522

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 282/303 (93%), Gaps = 5/303 (2%)
 Strand=Plus/Plus

Query  5    aaaaCGCAACGAAAGAG-AAATGGGT-TCGAAGTCTCCAAATATTTCTGCACTTGTGTTA  62
            |||||||||| || ||| |||||||| | |||||||||||||||| ||||| || |||||
Sbjct  1    AAAACGCAACTAAGGAGAAAATGGGTAT-GAAGTCTCCAAATATTGCTGCATTTATGTTA  59

Query  63   CCACTGCTTCTTATACTCTTCACTCTTTCCTCTCAGCTTGAAGTCGTGGAATGTACAGGC  122
            ||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||
Sbjct  60   CCACTGCTTCTTATACTTTTCACGCTTTCCTCTCAGCTTAAAGTCGTGGAATCTACAGGC  119

Query  123  CGCAAAC-TGTCGTGGGGGTTTTCGGGAACGCCTATCGTGTACACACCACCTTCAAGGTC  181
            ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  120  CGCAAACTTG-CGTGGGGGTTTTCGGGAACACCTATCGTGTACACACCACCTTCAAGGTC  178

Query  182  ATGTGGAACTTCTCCAGCAGTATTCACTTGGAAGTGGAGGAGACCCCGACCATGCAGACT  241
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct  179  ATGTGGAACTTCTCCAGCAGTATTCACTTCGAAGTGGAGGAGACCCCGACCATGCAGGCT  238

Query  242  TCCTCCAGGAAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTATGTGCGTCTGTGTC  301
            ||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct  239  TCCTCCAGGCAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTACGTACTTCTGTGTC  298

Query  302  TTT  304
            |||
Sbjct  299  TTT  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14074969720


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5