BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925647
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65560.1 | Symbols: | Zinc-binding dehydrogenase family pro... 1607 0.0
AT5G16960.1 | Symbols: | Zinc-binding dehydrogenase family pro... 158 1e-37
> AT1G65560.1 | Symbols: | Zinc-binding dehydrogenase family protein
| chr1:24371387-24373798 REVERSE LENGTH=1399
Length=1399
Score = 1607 bits (870), Expect = 0.0
Identities = 1022/1096 (93%), Gaps = 8/1096 (1%)
Strand=Plus/Plus
Query 1 CCATCACAGATTTAGCACAAATGGAAGAAATTGCAGTGGTGGAGAACAAGAAAGTGATAC 60
|||||||||| | | |||||||| |||| || |||||||||||||||||||||||||||
Sbjct 106 CCATCACAGACTCATAACAAATGGGAGAAGTTTCAGTGGTGGAGAACAAGAAAGTGATAC 165
Query 61 TAAAGAATTATGTAGATGGCATTCCTAAAGAAACAGACATGGAAGTGAAACTCGGAGAAA 120
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 166 TAAAGAATTATGTAGATGGTATTCCTACAGAAACAGACATGGAAGTGAAACTCGGAGAAA 225
Query 121 CAATTGAGCTAAGAGCACCAAAAGGGTCTTCTTCTTTCCTCGTCAAAAATCTCTACTTGT 180
|||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct 226 CAATTGAGCTAAAAGCACCAAAAGGATCTTCTTGTTTCCTCGTCAAAAATCTATACTTGT 285
Query 181 CTTGTGATCCTTACATGAGAGGTCGTATGCGTGACTTTCACGGTTCCTATCTCCCACCTT 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 286 CTTGTGATCCTTACATGAGAGGTCGTATGCGTGATTTTCACGGTTCCTATCTCCCGCCTT 345
Query 241 TTGTTCCTGGCCAACGTATCGAAGGGTTTGGTTTAGCGAA-AGTGATAGATTCTGATGAC 299
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 346 TTGTTCCTGGCCAACGTATCGAAGGGTTTGGTTTAGC-AAGAGTGATAGATTCTGATGA- 403
Query 300 GA-TAATTATAAGCCCGGTGACATAATCGGC-GGGATTATAGGTTGGGAAGAATACAGTT 357
| ||||||||||||||| || ||| || | || || || |||||||||||||||||||
Sbjct 404 TACTAATTATAAGCCCGGCGATATAGTC-TCTGGTATCATTGGTTGGGAAGAATACAGTT 462
Query 358 TGCTTCGTAGTTCAGATAACCTGCAGTTGAGAAAGATTCAGTTAGACGACGACATTCCGC 417
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 463 TGCTACGTAGTTCAGATAACCTACAGTTGAGAAATATTCAGTTAGACGACGACATTCCGC 522
Query 418 TTTCTTATCATCTCGGACTTCTTGGGATGGCTGGATTTACAGCATATGCAGGGTTTAATG 477
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 523 TTTCTTATCATCTCGGACTTCTCGGGATGGCTGGATTTACAGCATATGCAGGGTTTAATG 582
Query 478 AGATATGTTGTCCTAAGAAAGGAGAGAGTGTTTTTGTATCTGCAGCATCTGGAGCAGTTG 537
|||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||
Sbjct 583 AGATATGTTGTCCTAAGAAAGGGGACAGTGTTTTTGTCTCTGCAGCATGTGGAGCAGTTG 642
Query 538 GACAACTTGTTGGTCAGCTAGCTAAATTGCACGGCTGCCATGTTGTTGGGAGCGCCGGTA 597
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 643 GACAACTTGTTGGTCAGCTAGCTAAGTTGCACGGCTGCTATGTTGTTGGTAGCGCCGGTA 702
Query 598 GTAAGCAAAAGGTTGAGCTCCTTCAAAACGAGCTTGGGTTTGATAAAGCCTTTAACTACA 657
||||||||||||||||| ||||| ||||||||||||| | |||| |||||||||||||||
Sbjct 703 GTAAGCAAAAGGTTGAGATCCTTAAAAACGAGCTTGGATATGATGAAGCCTTTAACTACA 762
Query 658 AGGAAGAGGCTGATCTTGATGCTGCTTTGAAGAGGTACTTCCCGGAGGGGATCGATATTT 717
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 763 AGGAAGAGGCTGATCTTGATACTGCTTTGAAGAGGTACTTCCCGGAGGGGATAGATATCT 822
Query 718 ACTTCGACAATGTGGGAGGATCCATGCTTGATGCAGCGCTCCTCAACATGAAGGTCCGTG 777
||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 823 ACTTCGATAACGTGGGTGGATCCATGCTTGATGCAGCGCTCCTCAACATGAAGGTACGTG 882
Query 778 GAAGAATCGCGCTCTGTGGAATGGTGTCTTTGCAAAGCCTCTCAACCTCATCACAAGGAA 837
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 883 GAAGAATCGCGCTCTGTGGAATGGTGTCTTTGCAAAGCCTCTCAACTTCATCACAAGGAA 942
Query 838 TCAACAACCTATACAACGCTATCCCCAAACGTGTAAGACTAGAAGGGTTCTTGCAGAGTG 897
|||| |||||||||| ||||||| ||||||| |||| ||||||||||||||||||| |
Sbjct 943 TCAAGAACCTATACAGCGCTATCTACAAACGTTTAAGGTTAGAAGGGTTCTTGCAGAGCG 1002
Query 898 ATTACCT-CAATATCTTCCCACAGTTTCTTGAAAATGTCATGAGATATTACAAGGAAGGC 956
||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1003 ATTACCTTCA-TATCTTCCCACAGTTTCTTGAAAATGTCAAGAGATATTACAAAGAAGGC 1061
Query 957 AAGATTGTATACATCGAAGATATGTCTGAAGGCCTCGAGCTCGCTCCTGCTGCACTTGTT 1016
|||||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1062 AAGATTGTCTACGTCGAAGATATATCTGAAGGCCTCGACCTCGCTCCCGCTGCACTTGTT 1121
Query 1017 GGGTTGTTTTCCGGGAAAAATATTGGTAAACAGGTCGTTCGGGTTGCTAAAGAGTAATTG 1076
||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1122 GGGCTGTTTTCCGGGAAAAATATCGGTAAACAGGTTGTTCGGGTTGCTAAAGAGTGATTG 1181
Query 1077 TTTCTGAAAGTATATT 1092
||||||||||||||||
Sbjct 1182 TTTCTGAAAGTATATT 1197
> AT5G16960.1 | Symbols: | Zinc-binding dehydrogenase family protein
| chr5:5574281-5575910 REVERSE LENGTH=1323
Length=1323
Score = 158 bits (85), Expect = 1e-37
Identities = 260/344 (76%), Gaps = 14/344 (4%)
Strand=Plus/Plus
Query 432 GGACTTCTTGGGATGGCTGG-ATTTACAGCATATGCAGGGTTTAATGAGATATGTTGTCC 490
||||||||||| ||| |||| || || || |||| |||||| | ||||||||| |||
Sbjct 429 GGACTTCTTGGTATGCCTGGTATG-ACCGCGTATGTTGGGTTTTACGAGATATGTACTCC 487
Query 491 TAAGAAAGGAGAGAGTGTTTTTGTATCTGCAGCATCTGGAGCAGTTGGACAACTTGTTGG 550
||||||||||| | ||| ||||| || || |||||||| || ||||| || ||||| ||
Sbjct 488 AAAGAAAGGAGATACTGTGTTTGTGTCGGCTGCATCTGGCGCGGTTGGTCAGCTTGTAGG 547
Query 551 TCAGCTAGCTAAATTGCACGGCT-GCCATGTTGTTGGGAGCGCCGGTAGTAA-GCAAAAG 608
|| | ||||| ||| | || | | |||||||||| ||||| || ||||| | |||||
Sbjct 548 ACAATTTGCTAAGTTG-ATGGGTTGTTATGTTGTTGGAAGCGCTGGGAGTAAAG-AAAAG 605
Query 609 GTTGAGCTCCTTCAA-AACGAGCTTGGGTTTGATAAAGCCTTTAACTACAAGGAAGAGGC 667
||||| ||||| ||| ||| || |||| || ||| | ||||| |||||||||||||| |
Sbjct 606 GTTGATCTCCT-CAAGAACAAGTTTGGATTCGATGATGCCTTCAACTACAAGGAAGAA-C 663
Query 668 TGA-TCTTGAT-GCTGCTTTGAAGAGGTACTTCCCGGAGGGGATCGATATTTACTTCGAC 725
| |||| || | ||| | || |||| ||||| || || || || || ||||| ||
Sbjct 664 ACAATCTT-ATTGGTGCCCTAAAAAGGTGTTTCCCTGAAGGCATTGACATATACTTTGAG 722
Query 726 AATGTGGGAGG-ATCCATGCTTGATGCAGCGCTCCTCAACATGA 768
|| || ||||| | ||||| ||||||| | || | |||||||
Sbjct 723 AACGTAGGAGGCAAG-ATGCTGGATGCAGTGATCTTAAACATGA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5