BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925648 Length=1235 Score E Sequences producing significant alignments: (Bits) Value AT1G65570.1 | Symbols: | Pectin lyase-like superfamily protein... 1768 0.0 > AT1G65570.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:24374098-24375846 REVERSE LENGTH=1194 Length=1194 Score = 1768 bits (957), Expect = 0.0 Identities = 1112/1189 (94%), Gaps = 2/1189 (0%) Strand=Plus/Plus Query 21 ATGGCATTGTTTCTAAGCTTTGTTCGGGTCTTTAGCATCGTTATAACAATCATTATGTCC 80 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCATTGTTTCTAAGCTTTGTTCAGGTCTTTAGCATCGTTATAACAATCATTATGTCC 60 Query 81 CACTTTGGTCAGTTTGACGCAAGAACAAGTCTTAACGTTCTGAGTTTTGGCGCAAAACCA 140 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 61 CACTTTGGTCAGTTTGACGCAAGAACAAGTCTTAACGTTCTGAGTTTCGGTGCAAACCCA 120 Query 141 AATGGCATGGTAGATTCAGTAAAAGCCTTTTCAGATGCATGGGATGCCGCATGTGGAGTG 200 || || || ||||| || | |||||||||||| |||||||||||||| || ||||||||| Sbjct 121 AACGGGATCGTAGAGTCGGCAAAAGCCTTTTCGGATGCATGGGATGCTGCGTGTGGAGTG 180 Query 201 GCAGATTCAGTCGTAATTTACGTACCGAAAGG-AAGGTATTTGGTTAGTGGGGAGGTTCG 259 | ||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| | Sbjct 181 GAAGACTCAGTTGTTATTTACGTCCC-AAAGGGAAGGTATTTGGTTAGTGGGGAGGTTAG 239 Query 260 GTTCGAAGGAGAAAGTTGCAGAAGCCATGAGATAACCCTAAGGATTGATGGGACTTTAAT 319 |||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||| Sbjct 240 GTTCGAAGGAGAAAGTTGCAAAAGCCGTGAGATAACCCTAAGGATTGACGGAACTTTAAT 299 Query 320 TGGTCCTCAAGACTACAATTTGCTTGGGAAAAAAGAAAATTGGTTTAGTTTTAGTGGTGT 379 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 TGGTCCTCAAGACTACAGTTTGCTTGGGAAAAAAGAAAACTGGTTTAGTTTTAGTGGTGT 359 Query 380 TCACAATGTTACGATTCTTGGAGGTTCTTTTGATGCTAAGGGAACAACCTTGTGGAATTG 439 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 360 TCACAATGTTACGGTTCTTGGAGGTTCTTTTGATGCTAAGGGATCAACCTTGTGGAGTTG 419 Query 440 CAAAGCCAATGGTTACAATTGCCCTGAAGGTGCAACGACATTGAGATTCATGGACTCATA 499 ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 420 CAAGGCTAATGGTTACAACTGCCCTGAAGGTGCAACGACATTGAGATTCATGGACTCAAA 479 Query 500 CGACGTGAAGATCAAAGGAGTATTATCATTGAATAGCCAATTATTCCACATAGCAATAAA 559 | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 480 CAACGTGAAGATCAAAGGAGTATTATCGTTGAATAGCCAATTGTTCCACATAGCAATAAA 539 Query 560 CCGTTGCAGAAACATAAAGATTGAAGATGTCCGAATCATAGCACCAGATGAGAGTCCTAA 619 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 CCGTTGCAGAAACATAAAGATTGAAGATGTCCGAATCATAGCACCCGATGAGAGTCCTAA 599 Query 620 CACAGATGGCATTCACATTCAATTATCTACCGATATCGAAGTCCAAAATGCTTCCATCAA 679 ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 600 CACTGATGGCATTCACATTCAGCTATCTACCGATATCGAAGTCCGAAATGCTTCCATCAA 659 Query 680 AACCGGTGACGATTGTATCTCGATCGGACCCGGTACAAAGAACCTTATGGTTGATGGGAT 739 |||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 660 AACCGGAGACGATTGTATCTCAATCGGACCAGGTACAAAGAACCTTATGGTCGATGGGAT 719 Query 740 CACTTGCGGTCCTGGACATGGGATTAGCATTGGGAGCTTAGCAAAGTCCACAGAGGAGCA 799 |||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct 720 CACTTGTGGTCCTGGACATGGAATCAGCATTGGGAGCTTAGCAAAGTCCATAGAGGAGCA 779 Query 800 AGGCGTAGAAAATGTGACTGTGAAGAGGGCTGTGTTTGTACGGACGGACAATGGACTAAG 859 |||||| ||||| || |||||||||| |||||||||||||||||||||||||| || || Sbjct 780 AGGCGTGGAAAACGTAACTGTGAAGAATGCTGTGTTTGTACGGACGGACAATGGGCTTAG 839 Query 860 GATAAAGTCGTGGCCACGACATAGCAACGGGTTCGTGGAGAGGGTTCGGTTCTTAGGGGC 919 ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || Sbjct 840 GATCAAGTCGTGGCCGCGACATAGCAACGGGTTCGTGGAGAGGGTCCGGTTCTTAGGAGC 899 Query 920 TCTTATGGTTAATGTCTCATATCCTATCCTCATTGATCAGAACTATTGCCCTGGCGATTC 979 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TATTATGGTTAATGTCTCATATCCTATCCTCATTGATCAGAACTATTGCCCTGGCGATTC 959 Query 980 TTCTTGCCCTTCTCAGGAGTCGGGAATCAAAATAAACGATGTAATATACAGTGGAATAAA 1039 ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 960 TTCTTGCCCTTCTCAGGAGTCAGGAATCAAAATAAACGATGTAATATATAGTGGAATCAT 1019 Query 1040 GGGAACGTCGGCCACAAAGGTTGCTATAAAGATGGATTGCAGTGAGCAAGTCCCATGCAC 1099 |||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||||| Sbjct 1020 GGGAACATCGGCCACAGAGATTGCTATAAAAATGGATTGCAGTGAGAAAGTCCCATGCAC 1079 Query 1100 TGGGATTCGAATGCAGGCAATTAATCTAAATTATTATGGTGAAGCAGCAGAGACTTCTTG 1159 ||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||| Sbjct 1080 TGGGATTCGAATGCAGGCAATTAATCTAACTTCTTACGGTGAAGCAGCAAAGACTTCTTG 1139 Query 1160 CACAAATGTTTCTGGTAAGCAACTTGGTTTGGTTACACCTAGTGGATGT 1208 ||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1140 CACCAATGTTTCTGGTAAGCAACTTGGATTGGTTACACCTAGTGGATGT 1188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60692458905 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5