BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925648
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65570.1 | Symbols: | Pectin lyase-like superfamily protein... 1768 0.0
> AT1G65570.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:24374098-24375846 REVERSE LENGTH=1194
Length=1194
Score = 1768 bits (957), Expect = 0.0
Identities = 1112/1189 (94%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 21 ATGGCATTGTTTCTAAGCTTTGTTCGGGTCTTTAGCATCGTTATAACAATCATTATGTCC 80
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATTGTTTCTAAGCTTTGTTCAGGTCTTTAGCATCGTTATAACAATCATTATGTCC 60
Query 81 CACTTTGGTCAGTTTGACGCAAGAACAAGTCTTAACGTTCTGAGTTTTGGCGCAAAACCA 140
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 61 CACTTTGGTCAGTTTGACGCAAGAACAAGTCTTAACGTTCTGAGTTTCGGTGCAAACCCA 120
Query 141 AATGGCATGGTAGATTCAGTAAAAGCCTTTTCAGATGCATGGGATGCCGCATGTGGAGTG 200
|| || || ||||| || | |||||||||||| |||||||||||||| || |||||||||
Sbjct 121 AACGGGATCGTAGAGTCGGCAAAAGCCTTTTCGGATGCATGGGATGCTGCGTGTGGAGTG 180
Query 201 GCAGATTCAGTCGTAATTTACGTACCGAAAGG-AAGGTATTTGGTTAGTGGGGAGGTTCG 259
| ||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| |
Sbjct 181 GAAGACTCAGTTGTTATTTACGTCCC-AAAGGGAAGGTATTTGGTTAGTGGGGAGGTTAG 239
Query 260 GTTCGAAGGAGAAAGTTGCAGAAGCCATGAGATAACCCTAAGGATTGATGGGACTTTAAT 319
|||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||
Sbjct 240 GTTCGAAGGAGAAAGTTGCAAAAGCCGTGAGATAACCCTAAGGATTGACGGAACTTTAAT 299
Query 320 TGGTCCTCAAGACTACAATTTGCTTGGGAAAAAAGAAAATTGGTTTAGTTTTAGTGGTGT 379
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TGGTCCTCAAGACTACAGTTTGCTTGGGAAAAAAGAAAACTGGTTTAGTTTTAGTGGTGT 359
Query 380 TCACAATGTTACGATTCTTGGAGGTTCTTTTGATGCTAAGGGAACAACCTTGTGGAATTG 439
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 360 TCACAATGTTACGGTTCTTGGAGGTTCTTTTGATGCTAAGGGATCAACCTTGTGGAGTTG 419
Query 440 CAAAGCCAATGGTTACAATTGCCCTGAAGGTGCAACGACATTGAGATTCATGGACTCATA 499
||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CAAGGCTAATGGTTACAACTGCCCTGAAGGTGCAACGACATTGAGATTCATGGACTCAAA 479
Query 500 CGACGTGAAGATCAAAGGAGTATTATCATTGAATAGCCAATTATTCCACATAGCAATAAA 559
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 480 CAACGTGAAGATCAAAGGAGTATTATCGTTGAATAGCCAATTGTTCCACATAGCAATAAA 539
Query 560 CCGTTGCAGAAACATAAAGATTGAAGATGTCCGAATCATAGCACCAGATGAGAGTCCTAA 619
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 CCGTTGCAGAAACATAAAGATTGAAGATGTCCGAATCATAGCACCCGATGAGAGTCCTAA 599
Query 620 CACAGATGGCATTCACATTCAATTATCTACCGATATCGAAGTCCAAAATGCTTCCATCAA 679
||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 600 CACTGATGGCATTCACATTCAGCTATCTACCGATATCGAAGTCCGAAATGCTTCCATCAA 659
Query 680 AACCGGTGACGATTGTATCTCGATCGGACCCGGTACAAAGAACCTTATGGTTGATGGGAT 739
|||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 660 AACCGGAGACGATTGTATCTCAATCGGACCAGGTACAAAGAACCTTATGGTCGATGGGAT 719
Query 740 CACTTGCGGTCCTGGACATGGGATTAGCATTGGGAGCTTAGCAAAGTCCACAGAGGAGCA 799
|||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 720 CACTTGTGGTCCTGGACATGGAATCAGCATTGGGAGCTTAGCAAAGTCCATAGAGGAGCA 779
Query 800 AGGCGTAGAAAATGTGACTGTGAAGAGGGCTGTGTTTGTACGGACGGACAATGGACTAAG 859
|||||| ||||| || |||||||||| |||||||||||||||||||||||||| || ||
Sbjct 780 AGGCGTGGAAAACGTAACTGTGAAGAATGCTGTGTTTGTACGGACGGACAATGGGCTTAG 839
Query 860 GATAAAGTCGTGGCCACGACATAGCAACGGGTTCGTGGAGAGGGTTCGGTTCTTAGGGGC 919
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 840 GATCAAGTCGTGGCCGCGACATAGCAACGGGTTCGTGGAGAGGGTCCGGTTCTTAGGAGC 899
Query 920 TCTTATGGTTAATGTCTCATATCCTATCCTCATTGATCAGAACTATTGCCCTGGCGATTC 979
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TATTATGGTTAATGTCTCATATCCTATCCTCATTGATCAGAACTATTGCCCTGGCGATTC 959
Query 980 TTCTTGCCCTTCTCAGGAGTCGGGAATCAAAATAAACGATGTAATATACAGTGGAATAAA 1039
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 960 TTCTTGCCCTTCTCAGGAGTCAGGAATCAAAATAAACGATGTAATATATAGTGGAATCAT 1019
Query 1040 GGGAACGTCGGCCACAAAGGTTGCTATAAAGATGGATTGCAGTGAGCAAGTCCCATGCAC 1099
|||||| ||||||||| || |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1020 GGGAACATCGGCCACAGAGATTGCTATAAAAATGGATTGCAGTGAGAAAGTCCCATGCAC 1079
Query 1100 TGGGATTCGAATGCAGGCAATTAATCTAAATTATTATGGTGAAGCAGCAGAGACTTCTTG 1159
||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||
Sbjct 1080 TGGGATTCGAATGCAGGCAATTAATCTAACTTCTTACGGTGAAGCAGCAAAGACTTCTTG 1139
Query 1160 CACAAATGTTTCTGGTAAGCAACTTGGTTTGGTTACACCTAGTGGATGT 1208
||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 CACCAATGTTTCTGGTAAGCAACTTGGATTGGTTACACCTAGTGGATGT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5