BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925655

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06310.1 | Symbols: ACX6 | acyl-CoA oxidase 6 | chr1:1926791...   259    1e-68
  AT1G06290.1 | Symbols: ACX3, ATACX3 | acyl-CoA oxidase 3 | chr1...   220    5e-57


> AT1G06310.1 | Symbols: ACX6 | acyl-CoA oxidase 6 | chr1:1926791-1930258 
FORWARD LENGTH=2070
Length=2070

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 240/284 (85%), Gaps = 23/284 (8%)
 Strand=Plus/Plus

Query  32   TCACTACTCTCCGCCGGAGCTCAACGAGAGCTATGGATTCGATGTCAAGGAGATGAGGAA  91
            ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct  116  TCAGTACTCTCCACCGGAGCTCAACGAGAGCTATGGATTCGAAGTCAAGGAGATGAGAAA  175

Query  92   ATTACTCGACAGG-CACAACTTGGAGGACATAGACTGGCTTTCTGGGCTCATGATGCTGA  150
            | |||||||| || |||||||| ||||| | ||||||||||| |||||||||||||| ||
Sbjct  176  ACTACTCGAC-GGACACAACTTAGAGGAAAGAGACTGGCTTTATGGGCTCATGATGCAGA  234

Query  151  GCAATTTGTTTAACCGGAAAGAGAGAGGAGGTAAGATTTTCGTCTCGCCGGATTACAATC  210
            ||||| ||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct  235  GCAATCTGTTTAACCCGAAACAGAGAGGAGGTCAGATTTTCGTCTCGCCCGATTACAATC  294

Query  211  AC-C--T-----------------T-AGTATGAAGCGGATCTTGTACTTGCTCGAAAATG  249
            |  |  |                 | ||||||||||||||||| |||||||||||||| |
Sbjct  295  AAACAATGGAGCAACAGCGCCAGATCAGTATGAAGCGGATCTTTTACTTGCTCGAAAAAG  354

Query  250  GGGTCTTTCAAGGATGGTTAACGGAAACAGGTCCTGAGGCTGAG  293
            ||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct  355  GGGTCTTTCAAGGATGGCTAACGGAGACAGGTCCTGAAGCTGAG  398


> AT1G06290.1 | Symbols: ACX3, ATACX3 | acyl-CoA oxidase 3 | chr1:1922352-1926278 
FORWARD LENGTH=2375
Length=2375

 Score =  220 bits (119),  Expect = 5e-57
 Identities = 159/178 (89%), Gaps = 4/178 (2%)
 Strand=Plus/Plus

Query  36   TACTCTCCGCCGGAGCTCAACGAGAGCTATGGATTCGATGTCAAGGAGATGAGGAAATTA  95
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  180  TACTCTCCACCGGAGCTCAACGAGAGCTATGGATTCGATGTCAAGGAGATGAGAAAATTA  239

Query  96   CTCGACAGG-CACAACTTGGAGGA-CATAGACTGGCTTTCTGGGCTCATGATGCTGAGCA  153
            || ||| || |||||| ||| ||| |   |||||| ||| ||| |||||||||| |||||
Sbjct  240  CTTGAC-GGACACAACGTGGTGGATCGG-GACTGGATTTATGGACTCATGATGCAGAGCA  297

Query  154  ATTTGTTTAACCGGAAAGAGAGAGGAGGTAAGATTTTCGTCTCGCCGGATTACAATCA  211
            || ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  298  ATCTGTTTAATCGGAAGGAGAGAGGAGGTAAGATTTTCGTGTCGCCGGATTACAATCA  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16236482927


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5