BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925656

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59835.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   289    2e-77


> AT1G59835.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G50610.1); 
Has 55 Blast hits to 24 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22025041-22025421 
REVERSE LENGTH=381
Length=381

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 255/302 (84%), Gaps = 10/302 (3%)
 Strand=Plus/Plus

Query  1    TGACGCAAAAAAGTTGAAGAAGATGGAT-GGTCATGAGCATTCCAATGACA-ATTTGGTT  58
            ||| |||| ||||| ||| ||||||| | ||||||||||||| |||||| | |||||| |
Sbjct  75   TGAAGCAAGAAAGTCGAAAAAGATGG-TCGGTCATGAGCATTTCAATGA-ATATTTGGAT  132

Query  59   CCCGCTTTT-CTAGGGTACACACTTGGTGTACTTAAAGATGA-TTTCATAGAAGCAAAAA  116
            ||  ||||| | |||| | ||| |||| ||| ||||||| || |||| | |||| |||||
Sbjct  133  CCTACTTTTGC-AGGGCATACATTTGGAGTAGTTAAAGAAGATTTTC-TCGAAGTAAAAA  190

Query  117  GGTTAAAGAAAATTGATGATGAAAATAGTCTAAACAACATATTTGCAAATGATTTTGTGC  176
             | |||||||||||| ||||||||||| |||||| |||| ||||  |||||| |||| ||
Sbjct  191  AGCTAAAGAAAATTGGTGATGAAAATAATCTAAAAAACAGATTTATAAATGAGTTTGCGC  250

Query  177  ATATTAATCCAGGAGATAGTCCCGGTA-TGGAGCATCTAGGAGTTATAAACAACAGATTT  235
             || |||||||| |||||||| ||||| ||| ||||| | ||||| ||||||||| ||||
Sbjct  251  CTACTAATCCAGAAGATAGTCTCGGTATTGG-GCATCCAAGAGTTCTAAACAACAAATTT  309

Query  236  ACAAATGATTTTGTGCCTACTAATCCAGGAGATAGTCCCGGTATTGGGCATCCAGGAGTT  295
            ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  310  ACAAATGATTTTGCGCCTACTAATCCAGGAGATAGTCCCGGTATCAGGCATCCAGGAGTT  369

Query  296  GT  297
            ||
Sbjct  370  GT  371


 Score =  191 bits (103),  Expect = 5e-48
 Identities = 138/155 (89%), Gaps = 1/155 (1%)
 Strand=Plus/Plus

Query  222  TAAACAACAGATTTACAAATGATTTTGTGCCTACTAATCCAGGAGATAGTCCCGGTATTG  281
            |||| |||||||||| |||||| |||| |||||||||||||| |||||||| ||||||||
Sbjct  221  TAAAAAACAGATTTATAAATGAGTTTGCGCCTACTAATCCAGAAGATAGTCTCGGTATTG  280

Query  282  GGCATCCAGGAGTTGTTAACAACAAATTTACAAATGATTTTGCGCCAACTAATCCAAGAA  341
            |||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||| || 
Sbjct  281  GGCATCCAAGAGTTCTAAACAACAAATTTACAAATGATTTTGCGCCTACTAATCCAGGAG  340

Query  342  ATAGTCCAGGTATTGGGCATCCAG-AGTTGTAAAT  375
            ||||||| |||||  ||||||||| |||||| |||
Sbjct  341  ATAGTCCCGGTATCAGGCATCCAGGAGTTGTGAAT  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5