BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925664
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16540.1 | Symbols: DegP11 | DegP protease 11 | chr3:5626290... 267 3e-70
> AT3G16540.1 | Symbols: DegP11 | DegP protease 11 | chr3:5626290-5628857
REVERSE LENGTH=1668
Length=1668
Score = 267 bits (144), Expect = 3e-70
Identities = 714/972 (73%), Gaps = 108/972 (11%)
Strand=Plus/Plus
Query 251 GGATTTGTAATCTCTGGAAATAAGATTCTTACGAATGCTCATGT--AG-TGGC------T 301
||||||| |||| | |||| || ||||||||||| |||||||| | |||| |
Sbjct 409 GGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCTATGAAT 468
Query 302 GATCACACTTTCGTGCAAGTTAGAAAG-CATGGTTCACCAA-CAAAGTACACAGCAAAAG 359
|||||||| |||||| | || | |||| ||||| || | || |||| |||| ||||||||
Sbjct 469 GATCACACATTCGTGGACGTCA-AAAGACATGGCTCTCAAATCAAA-TACAAAGCAAAAG 526
Query 360 TTCAAGCA-ATGGGGCATGAATGTGATTTAGCGATTTTGGTA-ATCAATAGCAAAAAGTT 417
||||| | || |||||||||||||| || || |||| | ||| |||| | ||||
Sbjct 527 TTCAA-AAGATTTCACATGAATGTGATTTGGCCATCTTGG-AGATCGATAGTGACGAGTT 584
Query 418 TTGGAAGGATATGAAGCCCTTGGACCTCGGAGACGTA-C-CCTCTCTATACGAAACTGTA 475
|||||||| |||||| |||||||| || |||||| || | |||||| | | | || ||
Sbjct 585 TTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTCCA-A-G-AA--GT- 638
Query 476 TCTGT-TGTTGGATACCCTCAAGGTGGTGACAACATTTCCATTACCAAAGGTGTTGT-CT 533
| ||| ||| | | | |||||||| || || | |||||| |||||| | || ||
Sbjct 639 TGTGTCCGTT-G-T----T---GGTGGTGAAAATATCTGCATTACAAAAGGTCTAGTACT 689
Query 534 CTAGAGTTGAAGTTACAAAGTATA-G-TCACA--GCCA---ATCTAAGCTAATGACAACA 586
|||||||||| || || |||| | | ||| | || |||| ||| || ||| |
Sbjct 690 -TAGAGTTGAAACTA-GAA-TATACGATTACAGTGACAGTGATCT--GCT-AT--CAATA 741
Query 587 CAGATAGATGCGGCTATTAATCCA-GGAAATAGCGGTGGTCCAGTGATCATGGAAAACAA 645
||||| ||||| |||| || | | | |||||| ||||| || ||||| |||| ||||||
Sbjct 742 CAGATTGATGCAACTATCAA-CGATGAAAATAGTGGTGGCCCGGTGATTATGGGAAACAA 800
Query 646 AGTCGTTGGTGTAGCATTTCAAGGTCTTTCACGCTCACAAAATACAGGCTACATAATCCC 705
||||||| | || | | || | | | | |||| ||| | | |||||
Sbjct 801 AGTCGTT-G-GT-G----T---GG----T-A---T-ATGAAAT--AGGTTTTGTGATCCC 839
Query 706 AACTCCAGTAGTTAACCATTTCTTAACTAGTGTTGAAGAAAACGGTCAAT-TTGTTGGGT 764
||||||| || |||| |||||| ||||||||||| |||| | | | |||| || || ||
Sbjct 840 AACTCCAATAATTAAGCATTTCATAACTAGTGTTCAAGAGAGCAGACAATATTCTT--GT 897
Query 765 TT-TGTTCACTAGG-TATATCATGTC-AGCATATGGAGAATACTCATTTCCGTAACCACT 821
|| | ||| | || | | |||| || | | | | || ||| ||| ||||||| || |
Sbjct 898 TTCGGCTCA-TTGGATCTTTCATATCAATC-TCTCGAAAATGTTCAAATCCGTAATCA-T 954
Query 822 TT-AAGATGGGCCCTAAAATGACAGGGATTC-GAATAAGAAAAATAAA-TCGGTCGTCGA 878
|| |||||| ||| | |||||||||| |||| | ||| |||||||| || |||||||
Sbjct 955 TTCAAGATGAGCCATGAAATGACAGGAATTCTTATTAA-CAAAATAAACTC-GTCGTCGG 1012
Query 879 GTGCTTACAATATTCTGA-AAAAGGATGACATTCTTCTCGCAATTGATGGTGTTCCTATA 937
| |||||||| ||| ||| |||| || |||||| |||| ||||||||||||||||| |||
Sbjct 1013 GGGCTTACAAAATTTTGAGAAAA-GACGACATTATTCTTGCAATTGATGGTGTTCCAATA 1071
Query 938 GAAAACGATGAGACAGTTATTTTTCGGAA-GAAGGAACGTATAAATTTCAGTC-ATTTGG 995
| ||| ||||||| |||| ||| | || || | ||| ||| ||||||| | | ||||
Sbjct 1072 GGAAATGATGAGAAAGTTCCTTTCCAAAACAAAAG-ACGGATAGATTTCAG-CTACTTGG 1129
Query 996 TTTCTATGAAGAAACCAGGTGAAAAAACGTCACTCAAAGTCTTAAGAGAGGGAAA-GAAA 1054
|||||||||||||||||||||||||| | | | | ||||| ||| || | ||||| ||
Sbjct 1130 TTTCTATGAAGAAACCAGGTGAAAAAGCCTTAGTTAAAGTTTTACGAAACGGAAAAGAGT 1189
Query 1055 CATGAATTCAATATCAATATAACACCTGTGGAATCACTACT--ACCAGTATATCA-TTTT 1111
|||| | |||||||| | ||| ||| ||| || || ||| || ||| | || ||||
Sbjct 1190 -ATGAGTACAATATCAGTCTAAAACCGGTGAAACCAA-ACTTTAC-AGTGCAACAATTTT 1246
Query 1112 GATAA-GCTTCCAAGTTATTACATATTCGCGGGGTTT-GTCTTCT-TGCCTCTCACTAAA 1168
|||| | |||||||||| |||||||| | ||||||| || || | ||||||||||||||
Sbjct 1247 -ATAATG-TTCCAAGTTACTACATATTTG-GGGGTTTTGTTTT-TGTGCCTCTCACTAAA 1302
Query 1169 CCATACCTCGAT 1180
|||| || |||
Sbjct 1303 ACATATCTTGAT 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5