BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925665
Length=418
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65642.1 | Symbols: | pseudogene of F-box family protein | ... 303 6e-82
> AT1G65642.1 | Symbols: | pseudogene of F-box family protein
| chr1:24413931-24414970 REVERSE LENGTH=488
Length=488
Score = 303 bits (164), Expect = 6e-82
Identities = 193/207 (93%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 156 CTCTTTACCCGACGAGATT-TCCAACTTATCTTCTTCTTTATTCCGATTAAGTTCGCGAT 214
||||||||||||||||||| ||||||| |||| || ||||||||||| ||||||||| ||
Sbjct 45 CTCTTTACCCGACGAGATTCTCCAACTAATCTCCTCCTTTATTCCGACTAAGTTCGCAAT 104
Query 215 CAGAACCTCTGTCTTGTCCAAGAGATGGAGACATGTATGGTCCGAAACACCTTTTCTCTC 274
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct 105 CAGAACCTCTGTCTTGTCCAAGCGATGGAGGCATGTATGGTCCGAAACACCTTCTCTCTA 164
Query 275 CATTGATTGCCGTAGTGCGGACGCTAACTCGATAAACAAAACCCTAGCTAGCTATTCAGC 334
|||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||
Sbjct 165 CATTGATTGCCGTAGTGCAGACACTAACTCGATAAACAAAACCCTAGCTAGATACTCAGC 224
Query 335 TCCCAAAATCATGAGTTTCCATCTCTG 361
|||||||||||||||||||||||||||
Sbjct 225 TCCCAAAATCATGAGTTTCCATCTCTG 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19805493106
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5