BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925672
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65690.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1243 0.0
> AT1G65690.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:24431430-24432953
REVERSE LENGTH=1026
Length=1026
Score = 1243 bits (673), Expect = 0.0
Identities = 759/801 (95%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 1 GTCATCAAGATTCTCCAAAAATGTCCCAACACCAAAAAATCTATCCGGTCCACGATCCTG 60
|||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 36 GTCATCAAGATTTTCCAAAAATGTCTCAACACCAAAAAATCTATCCGGTCCAAGATCCAG 95
Query 61 AAGCCCCAACGGCACGTCCAACGGCTCCTTTGGTTCCTCGTGGTTCCTCAAGATCAGAAC 120
||||| |||| || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 96 AAGCCGCAACAGCGCGTCCAACAGCTCCTTTGGTTCCTCGTGGTTCCTCTAGATCAGAAC 155
Query 121 ATGGAGACCCATCCAAAGTCCCTTTGAACCAACGGCCACAACAGTTCGTACCGTTGGCTC 180
|||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 156 ATGGAGACCCATCCAAAGTCCCTTTGAACCAAAGGCCACAACGGTTCGTGCCGTTGGCTC 215
Query 181 CTCCAAAGAAGAGAAGAAGTTGTTGTTGCAGATGCGTGTGTTACACGTTCTGCTTCCTCT 240
||||||||||||||||||||||||||||||||||| | || |||||||||||||| || |
Sbjct 216 CTCCAAAGAAGAGAAGAAGTTGTTGTTGCAGATGCTTTTGCTACACGTTCTGCTTTCTTT 275
Query 241 TGCTTCTTGTTGTTGCAGTAGGCGCGA-CGATTGGTATACTATACCTTGTCTTTAAACCG 299
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 276 TGCTTCTTGTCGTTGCAGTAGGCGC-ATCCATTGGTATACTATACCTTGTCTTTAAACCG 334
Query 300 AAGTTACCGGATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCATTGAACCAAGAC 359
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 335 AAGCTACCGGATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCACTGAACCAAGAC 394
Query 360 TCGAGTTTGACTACGGCTTTTAACGTGACCATAACCGCTAAGAATCCGAACGAGAAGATT 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 395 TCGAGTTTGACTACGGCTTTTAACGTGACTATAACCGCTAAGAATCCGAACGAGAAGATT 454
Query 420 GGAATTTACTATGAAGATGGGAGCAAGATTACTGTGTGGTACCTGGAAAATCAACTAAGC 479
|||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 455 GGAATTTATTATGAAGATGGGAGCAAGATTACCGTGTGGTACATGGAACATCAACTAAGC 514
Query 480 AATGGGTCGTTGCCAAAATTTTACCAAGGCCATGAAAATACGACAGTGATATACGTAGAA 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 AATGGGTCGTTGCCAAAATTTTACCAAGGACATGAAAATACGACAGTGATATACGTAGAA 574
Query 540 ATGACTGGTCAAACACAAAATGCATCGGGTTTAAGGACGACATTAGAAGAGCAACAACAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ATGACTGGTCAAACACAAAATGCATCGGGTTTAAGGACGACATTAGAAGAGCAACAACAA 634
Query 600 AGAACCGGGAATATACCATTGAGAATTAGAGTTAACCAACCGGTTCGGATTAAATTCGGG 659
|||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||
Sbjct 635 AGAACCGGGAATATACCATTGAGAATTAGAGTAAACCAACCGGTTCGGGTCAAATTTGGG 694
Query 660 AAGTTGAAGCTCTTCGAGGTGAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGTTTG 719
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 695 AAGTTGAAGCTCTTCGAAGTAAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGCTTG 754
Query 720 GCTACAAATAATGTTATTAAGATTCAGAGTAGTAGTTGCAAATTTCGACTTAGGTTATAA 779
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 755 GCTACCAATAATGTTATTAAGATTCAAAGTAGTAGTTGCAAATTTCGTCTTAGGTTATAG 814
Query 780 ATCCGtttttttATT-TATAA 799
|||||||||||| || |||||
Sbjct 815 ATCCGTTTTTTT-TTATATAA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5