BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925674
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02770.1 | Symbols: | Protein of unknown function (DUF626) ... 113 3e-24
AT1G28500.1 | Symbols: | Protein of unknown function (DUF626) ... 65.8 7e-10
AT1G27860.1 | Symbols: | Protein of unknown function (DUF626) ... 63.9 3e-09
> AT1G02770.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:604873-606693 REVERSE LENGTH=1218
Length=1218
Score = 113 bits (61), Expect = 3e-24
Identities = 201/264 (76%), Gaps = 27/264 (10%)
Strand=Plus/Plus
Query 191 ATCCTGATCGTCCCTTGGTCAACCGTTATGCTAGAT-TGGGTCTTCATCGTTACAATATG 249
||||||||| | |||||||| | ||||||||| | ||| |||||||| |||||||||
Sbjct 248 ATCCTGATCCTGTATTGGTCAAGCTTTATGCTAG-TGCGGGGCTTCATCGCTACAATATG 306
Query 250 AAGGAGGGGACAAACTTCGAGCTCGATTG-TCTAATCAAATTCAACAAG----CGGTGCA 304
||||||||| |||||| |||||| ||| | |||| |||||||||||| | ||||
Sbjct 307 TTGGAGGGGACGAACTTCAAGCTCG-TTGATGTAATGAAATTCAACAAGTTAATGATGCA 365
Query 305 TTGGTGCTTCTTCTTACTGGATAACTTTGGC-TGCACGCGATACAGTTGCCCGCAGTCCG 363
|| || || ||| || |||||||| | ||||| ||| ||||| || || ||
Sbjct 366 TT--TG--TCCCCTTTCTACATAACTTT-ACTTGCACAAGATCCAGTT---AGCCGTTCG 417
Query 364 -ATGCAAACCTTTCAGGTTCAAGTTGATGAAAAGC-GCGCTC-GT-CTTTTGGATTTGAC 419
| |||||||||||||||||||||||||||| | | | || | || | |||||||||
Sbjct 418 CA-GCAAACCTTTCAGGTTCAAGTTGATGAACA-CTGT-CTTAGCACTAT-GGATTTGAC 473
Query 420 GTGTTCTA-TTGCTAGAGTTAAAG 442
| |||||| |||||||| |||||
Sbjct 474 G-GTTCTAATTGCTAGACCTAAAG 496
> AT1G28500.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:10018691-10020350 FORWARD LENGTH=981
Length=981
Score = 65.8 bits (35), Expect = 7e-10
Identities = 45/50 (90%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 757 ATTGGCGAGCATGTTGAACGCAAAGCTATCATTAAAAGTGGCATCGGTGA 806
||||| |||||||||||||||||||||||||||| ||| | ||||| |||
Sbjct 811 ATTGGTGAGCATGTTGAACGCAAAGCTATCATTAGAAGAGTCATCGATGA 860
> AT1G27860.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:9704558-9706238 REVERSE LENGTH=870
Length=870
Score = 63.9 bits (34), Expect = 3e-09
Identities = 56/66 (85%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 757 ATTGGCGAGCATGTTGAACGCAAAGCTATCATTAAAAGTGGCATCGGTGAGCATACAGGA 816
||||| |||||||||||||||||||||||||||| ||| | ||||| || | | |||||
Sbjct 697 ATTGGTGAGCATGTTGAACGCAAAGCTATCATTAGAAGAGTCATCGATG--CTT-CAGGA 753
Query 817 TTCTTG 822
| ||||
Sbjct 754 TACTTG 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5