BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925684 Length=577 Score E Sequences producing significant alignments: (Bits) Value AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3... 305 2e-82 AT3G24630.1 | Symbols: | unknown protein; Has 5348 Blast hits ... 191 7e-48 > AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132310-9134030 FORWARD LENGTH=1067 Length=1067 Score = 305 bits (165), Expect = 2e-82 Identities = 250/288 (87%), Gaps = 17/288 (6%) Strand=Plus/Plus Query 177 AACTCGGATTCGCAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAG 230 ||||| || || ||||||||||||||| | | |||| | |||||||||||||||||||| Sbjct 284 AACTCTGACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAG 343 Query 231 CAAGTTG--A----T--CCG-TCGCGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 281 ||||||| | | | || |||||||||||||||||||||||||||||||||||| Sbjct 344 CAAGTTGACACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG 403 Query 282 AAGCAGTTTGGTGATGCTAGTGGTTCATCAAATGAGGCTGCTAACAAAAGACAAGGAAGG 341 || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 404 AAACAGTTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGA 463 Query 342 GCTTCTCAGAACAGTAGTAATTATGACAAGTCAC-TGTTGCATAAGAATTCATATGATGG 400 ||||||||||||| |||| || | ||||||||| | |||||||||||||| |||||||| Sbjct 464 GCTTCTCAGAACAATAGTTATGACAACAAGTCACCT-TTGCATAAGAATTCTTATGATGG 522 Query 401 CACTGGAAGATCCAAGCCTAAACCTGCCAACCTTAGAGCTGATGAAAG 448 ||||||| ||| | |||||||||| |||||||||||||||||||||| Sbjct 523 TACTGGAAAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAG 570 > AT3G24630.1 | Symbols: | unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). | chr3:8988055-8990873 FORWARD LENGTH=2489 Length=2489 Score = 191 bits (103), Expect = 7e-48 Identities = 114/119 (96%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 17 AAACACAATGCCTGAAGGGAAATTGAGATCAGGAGTTTATAGATCATTTATAATGTGTGA 76 ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 173 AAA-ACAATGCCTGAAGGGAAATTAAGATCAGGAGTTTATAGATCATTCATAATGTGTGA 231 Query 77 TGATCCAAGAGATGTTGTGGATTGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA 135 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 232 TGATCCAAGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA 290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27729249144 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5