BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925684

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3...   305    2e-82
  AT3G24630.1 | Symbols:  | unknown protein; Has 5348 Blast hits ...   191    7e-48


> AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132310-9134030 
FORWARD LENGTH=1067
Length=1067

 Score =  305 bits (165),  Expect = 2e-82
 Identities = 250/288 (87%), Gaps = 17/288 (6%)
 Strand=Plus/Plus

Query  177  AACTCGGATTCGCAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAG  230
            ||||| || || ||||||||||||||| | | |||| |  ||||||||||||||||||||
Sbjct  284  AACTCTGACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAG  343

Query  231  CAAGTTG--A----T--CCG-TCGCGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG  281
            |||||||  |    |    | || ||||||||||||||||||||||||||||||||||||
Sbjct  344  CAAGTTGACACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG  403

Query  282  AAGCAGTTTGGTGATGCTAGTGGTTCATCAAATGAGGCTGCTAACAAAAGACAAGGAAGG  341
            || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| 
Sbjct  404  AAACAGTTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGA  463

Query  342  GCTTCTCAGAACAGTAGTAATTATGACAAGTCAC-TGTTGCATAAGAATTCATATGATGG  400
            ||||||||||||| |||| || |  ||||||||| | |||||||||||||| ||||||||
Sbjct  464  GCTTCTCAGAACAATAGTTATGACAACAAGTCACCT-TTGCATAAGAATTCTTATGATGG  522

Query  401  CACTGGAAGATCCAAGCCTAAACCTGCCAACCTTAGAGCTGATGAAAG  448
             ||||||| ||| | |||||||||| ||||||||||||||||||||||
Sbjct  523  TACTGGAAAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAG  570


> AT3G24630.1 | Symbols:  | unknown protein; Has 5348 Blast hits 
to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; 
Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; 
Other Eukaryotes - 2313 (source: NCBI BLink). | chr3:8988055-8990873 
FORWARD LENGTH=2489
Length=2489

 Score =  191 bits (103),  Expect = 7e-48
 Identities = 114/119 (96%), Gaps = 1/119 (1%)
 Strand=Plus/Plus

Query  17   AAACACAATGCCTGAAGGGAAATTGAGATCAGGAGTTTATAGATCATTTATAATGTGTGA  76
            ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  173  AAA-ACAATGCCTGAAGGGAAATTAAGATCAGGAGTTTATAGATCATTCATAATGTGTGA  231

Query  77   TGATCCAAGAGATGTTGTGGATTGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA  135
            |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  232  TGATCCAAGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA  290



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27729249144


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5